Protein Info for Psyr_4544 in Pseudomonas syringae pv. syringae B728a

Annotation: SSU ribosomal protein S19P

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 25 50 75 91 TIGR01050: ribosomal protein uS19" amino acids 1 to 91 (91 residues), 145.7 bits, see alignment E=2e-47 PF00203: Ribosomal_S19" amino acids 3 to 83 (81 residues), 125 bits, see alignment E=4.3e-41

Best Hits

Swiss-Prot: 100% identical to RS19_PSE14: 30S ribosomal protein S19 (rpsS) from Pseudomonas savastanoi pv. phaseolicola (strain 1448A / Race 6)

KEGG orthology group: K02965, small subunit ribosomal protein S19 (inferred from 90% identity to hel:HELO_1240)

MetaCyc: 79% identical to 30S ribosomal subunit protein S19 (Escherichia coli K-12 substr. MG1655)

Predicted SEED Role

"SSU ribosomal protein S19p (S15e)" in subsystem Ribosome SSU bacterial

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q4ZMP8 at UniProt or InterPro

Protein Sequence (91 amino acids)

>Psyr_4544 SSU ribosomal protein S19P (Pseudomonas syringae pv. syringae B728a)
MPRSLKKGPFIDLHLLKKIEVAAEKNDRKPVKTWSRRSMILPQMVGLTIAVHNGRQHVPV
LVNEDMVGHKLGEFAGTRTYRGHVADKKAKR