Protein Info for Psyr_4446 in Pseudomonas syringae pv. syringae B728a

Annotation: SmpA/OmlA

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 112 signal peptide" amino acids 1 to 21 (21 residues), see Phobius details PF04355: SmpA_OmlA" amino acids 31 to 97 (67 residues), 57.6 bits, see alignment E=4.3e-20

Best Hits

KEGG orthology group: K04064, osmotically inducible lipoprotein OsmE (inferred from 100% identity to psb:Psyr_4446)

Predicted SEED Role

"Osmotically inducible lipoprotein E precursor"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q4ZMZ6 at UniProt or InterPro

Protein Sequence (112 amino acids)

>Psyr_4446 SmpA/OmlA (Pseudomonas syringae pv. syringae B728a)
MYKKLFAATFVLATMAGCSNTTVQNPVDYVTYRNEPLVKQVENGMTRQQVLTIGGEPSST
IERRVNPGTCNNYVMNKDGHKQVYHVSFNSDGRVTNKGFMTCEQREKNEKAM