Protein Info for Psyr_4373 in Pseudomonas syringae pv. syringae B728a

Annotation: PAS

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 907 TIGR00229: PAS domain S-box protein" amino acids 417 to 538 (122 residues), 25.8 bits, see alignment E=4.9e-10 PF08447: PAS_3" amino acids 443 to 525 (83 residues), 43.1 bits, see alignment E=1.3e-14 PF08448: PAS_4" amino acids 552 to 661 (110 residues), 28.8 bits, see alignment E=3.8e-10 PF00512: HisKA" amino acids 675 to 741 (67 residues), 27.1 bits, see alignment 1.1e-09 PF02518: HATPase_c" amino acids 787 to 899 (113 residues), 75.3 bits, see alignment E=1.5e-24

Best Hits

KEGG orthology group: None (inferred from 100% identity to psb:Psyr_4373)

Predicted SEED Role

"Sensory box histidine kinase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q4ZN69 at UniProt or InterPro

Protein Sequence (907 amino acids)

>Psyr_4373 PAS (Pseudomonas syringae pv. syringae B728a)
MPQPLPVSSEPGPIGADLYLLLDDEGRIQSISPHLLSRLDIAAPVPAAQRLMSLLLPNSA
LVIEGVPRDWLGHMLDLDFKGDDAHTLHARGWVQAHGKGWLLQLLDISDLMEEASAARSR
QQCLRFAGQMAERVRGCNVDRLTAVVSEQLEELAQLWRIPCVALVLPEVGGVGWRVYCQY
SAHTAPELWQVGQRLGTALDRFNVDATQQLRFGGSVDAGALQSIFGNADGFLIPHSRDNV
AKAWLMFGFYNAQQQAPDLGEREWLNLGSALAGPVLFRMSEQHNRHHVERLAVLQDLLGT
GWWELLPDRDEVLLAPQLARSLRLGDRVESLSRQDWLALIHPADRQELSSRLAQLRDKGT
PLLLCVRLAQTDPAQETLWFRIQGQALHRGQVQRVLGFMLDVSDIKNQETEAAAAHARLD
NLIASSPAVIYVQRYDHGNLEPTFFSDSLTPLLGWTLADCVDGQLAGYIHPDDHDIWFER
NRQLLREGFVSRRFRLRNRNGQYHWLLDEARLLRDDLGMPVEAVGLWLDVTEATLAAEHI
RRSEERYRILVEDSPAMICRYTPDLVLSFGNRPLAKYMECTPEQLTGINLGDWLSDEQRE
AFIKRIGQLTPEAPVSTEEICIELPGREYAWWIWADRGVFDEHGKLVEVQAVGRDNTDVR
RSRMQLNQSAKMATLGEMSTGLAHEINQPLNVMRMAVVNVLKRLGRGDVDIEYLTEKLNR
IDTQVQRAARVVDHMRVFGRRSEVEEQLFDPAQAVEGTISMLAEGMKGKGVQLRVGGMID
AVRVRGHVDQLEQVLINLMVNARDALLSRREKDRDFEPWISVEAERDENIIRLAVQDNGG
GIDPRLLERIFEPFFTTKPVGVGTGLGLSVSYGIVDQMGGQLSVANIGEGARFQIELPIF
NADQPGS