Protein Info for Psyr_4372 in Pseudomonas syringae pv. syringae B728a

Annotation: aspartate carbamoyltransferase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 678 transmembrane" amino acids 17 to 37 (21 residues), see Phobius details amino acids 377 to 400 (24 residues), see Phobius details amino acids 412 to 433 (22 residues), see Phobius details PF13400: Tad" amino acids 16 to 62 (47 residues), 25.6 bits, see alignment 1.3e-09 PF09977: Tad_C" amino acids 60 to 160 (101 residues), 28.4 bits, see alignment E=2.8e-10

Best Hits

KEGG orthology group: None (inferred from 100% identity to psb:Psyr_4372)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q4ZN70 at UniProt or InterPro

Protein Sequence (678 amino acids)

>Psyr_4372 aspartate carbamoyltransferase (Pseudomonas syringae pv. syringae B728a)
MSALDGYTALPSRQRGAIGLMAALTMGLALLCTLTVIDSGRLYLEKRSLQRVADIAALEA
AGRRGTCSGTAASAPDFASQSATRNGFTPNTDGRTLVTRCGTLAVDVAGPRVFVADSTQA
LAIQVVVAHPVPRSIAAGIGALFEKTPSPPNVTISATAVAASASPLAALTIRSAAVTVDS
TGAALLNPVVGSLLGGTLNLSVANWQGIADTNLSLLSYLNRLKTDLSLTAVGYNDVLNTS
VSVSQLLQSAINVISSNATLGGAAAIQGLQALKLASGTTTVLLGDLLSVQSGTDLAALNT
NLRLMDLVQGLAQLANKKTGVLTATQINVAGLAQVTTRIQVIEPPQLSAVGDPSRIDPLD
PRNGANRIYVRTAQMRALVSINLPVLGTITSLANTAGSVIGSLTPILNSALSLNLAGLGT
SATCALGLSSCMVTDFKLLTSDSSSSAGPRIDMSLSLASADSYVSGFTCTSNASKTLNVK
TDAALLSARIGSIDSSSAFPASTDPAAITALPVPVIDIGTMTCQKIAGLLGNCTARKPFG
GGGIGLTFDNVSQSALGSSTVTSTTFSSPNLPEISSAPFYLTRVAHTKPSTLLNGTASSV
KVNVYKPATSNVLGNVITGAATTLNSLTLALDAIVDDTLTRLLTSVVDPLFESLGVSMGA
TDVGTNLSCNLGQATLVI