Protein Info for Psyr_4314 in Pseudomonas syringae pv. syringae B728a

Annotation: Beta-ketoacyl synthase:Beta-ketoacyl synthase:Phosphopantetheine-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 500 1000 1500 2000 2500 3231 transmembrane" amino acids 2985 to 3004 (20 residues), see Phobius details PF00109: ketoacyl-synt" amino acids 12 to 259 (248 residues), 297.8 bits, see alignment 3.8e-92 amino acids 1541 to 1791 (251 residues), 233 bits, see alignment 2.3e-72 amino acids 2593 to 2834 (242 residues), 279.7 bits, see alignment 1.3e-86 PF02801: Ketoacyl-synt_C" amino acids 267 to 391 (125 residues), 120.2 bits, see alignment (E = 2.6e-38) amino acids 1800 to 1915 (116 residues), 111.2 bits, see alignment (E = 1.5e-35) amino acids 2843 to 2956 (114 residues), 111.3 bits, see alignment (E = 1.5e-35) PF16197: KAsynt_C_assoc" amino acids 395 to 491 (97 residues), 45.3 bits, see alignment (E = 5.2e-15) amino acids 1920 to 2037 (118 residues), 42.3 bits, see alignment (E = 4.5e-14) amino acids 2960 to 3072 (113 residues), 41.9 bits, see alignment (E = 6.3e-14) PF21089: PKS_DH_N" amino acids 634 to 693 (60 residues), 35.5 bits, see alignment (E = 4.1e-12) PF14765: PS-DH" amino acids 772 to 902 (131 residues), 71.9 bits, see alignment (E = 2.4e-23) PF08659: KR" amino acids 1126 to 1312 (187 residues), 131.4 bits, see alignment 1.7e-41 PF00106: adh_short" amino acids 1127 to 1286 (160 residues), 48 bits, see alignment 5.3e-16 PF13561: adh_short_C2" amino acids 1134 to 1285 (152 residues), 28.2 bits, see alignment 7.1e-10 PF00550: PP-binding" amino acids 1408 to 1472 (65 residues), 41.5 bits, see alignment (E = 6.7e-14) amino acids 2482 to 2544 (63 residues), 53.9 bits, see alignment (E = 8.6e-18)

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q4ZNC8 at UniProt or InterPro

Protein Sequence (3231 amino acids)

>Psyr_4314 Beta-ketoacyl synthase:Beta-ketoacyl synthase:Phosphopantetheine-binding protein (Pseudomonas syringae pv. syringae B728a)
MSSTKTDLDSTQVAIVGVGLRLPEADSIDAFWGKLKAGKSLISEVNEKRWSKAELYGDPK
TGGDKTSSIWGGFVDDIECFDANFFGISPRESKFMDPQQRIAMEMAWHAFEDAGICPSSV
KGTNTGVFMGVCHWDYAELLALNHTPIDPYFPTGTAYSILSNRISYYFDLKGPSISIDTA
CSSSLVSLALAVNAIKSGECELALAGGVNLIWSPQHFIAFTKNGMLSKDGKSYTFDDRAN
GYVRGEGGGLLLLKALDKAIEDGDNIYAVVRGIANNHGGKTGSLTVTNPQAQADLIAELY
RRSHIDVRDVSYIETHGTGTPLGDPIEIHGLKKAFAQASHAVDDPQSRKNYCGIGSVKTN
IGHLEGAAGVAGIIKILAALKNKELPGNLNFKSINPKIELTDTPFYIVDKHQPWASPADG
STGRIAGISSFGFGGSNAHAVIQEFIPETAQLSARAVADNHPVFAIPVSAKSSESLVAYA
QRLLAFLEDNPPNLPGIAHALQCQRDALTERVCFVVESIDELKLAIRSFIDTRAAAEHTF
VGNSYDAGEGKKLRSYAEENRASLTENWMSNHDMLSLAQYWVFGVAVDWNDLYLDAGLIP
AKVRLPLYSFERTAYWFPKKNADVAKPKQPGTVEFTLSSKAFFLEDHTVNNQSILPGVHY
LEMILSTIPRADKMINVDFSNVFWLSPFAIELSDDDVDIRKSIYLDFDSKQADANAASGQ
PGKGFRFYTHPKNIEGQAKDKVRVHVQGEYQPGSTVADRIDLPDMSPFKKIHRDQCYQYL
QSTGIYHGPRLQGVEQIHVGVDEVWVKVSIAGSQQSFSAHPAILDSVLQAGIATALSNNA
SRYPYVPFSLDSLSVYQICPTTVWARISEKNRFAGTKASLTFDLNIFTEQGEQVASAKNF
TMCLLRSPVGEQMTSKNNSGSNEPSSQNLYFSKQWVVDSTDHQQPPISSTAPADRANHVL
ALYVGSTIQDDRWIANYRNQVSAQTSCTFQSMALSSPEAVSSAPTIEAYSHVFSYIKKLL
ETKPKTIQHLLVCASSTLPDVIRSSLTALLRVAHNENPRIQGRFVSIENSPLVDSGSIIA
REFLIADGAFSVRHDAQGLRRIERITAQPVRPVQGKIPVLNEQPVFWITGGLGGIGQLIS
RQLAADFPGCTLYLTGRKTAAEQQAVFSALKSEIQARGGKIDYQPLDITDVVEVENFVAA
LKNTHHSVDVIFHAAGHIADNFILRKEVKDSLPVLSPKLDGTLAIDQAIKRLPLGKFVLF
SSVASTFGNAGQCDYAAANAFLDAFAIDRNQRVREGEGTGQTIAINWPLWQEGGMKMDAG
TLASVHETTGMEPLPTHEAMHALRYALTTTDDFPILVTYGNQEKIHAYIAGLNQRSVVPE
GGSQESPDPSKSGDDVDNEALFQYAQDYLKGKLAIVIERDAKTIRGDQKIEEYGFDSIMA
VEMIRQLEGQFGQLSKTLFFEYFTINEVADYLMDEYSEKLKSLYLEGRAPVVEVAAHTDT
PSKDKQVAEEAAAAPAPSINKQIEAVPVASQVAADDRDQHDIAIIGLSGRYPKSRNMDEL
WELLKSGQHAFEKIPADRWKHDAIYYKERDVWGKSTIKTGGFLDDIDKFDPRYFQISQLE
AEKMSPEVRLFLEVGVEALEDSGYSKESLQQLYKGDVGVVAGTMSNHYNLYGFQNNLTRG
GSASGSYTGTIPNMLSYFYGFTGPSLFVDTMCSATSTCIHVAVQMLRSGESKIVVAGGMN
LLLHPYNLISSSQEHFTTKTSDVIRSYGIGADGTILGEGVGAVVLKTLADAKRDGDNIWG
IIKGTALSNAGVRNGFTVPQPHMQALAIEKAIEDAQIDPQTIGYFEGHGSGTELGDPVEI
KGATQAFRKYTDKKQFCPIGSIKSNLAHLLAAAGIAGISKILLQFKHQQIVPSLGADTLN
SNIRFEDSPFYVHKELQSWPAPRSESNLVLPRRASITSIGAGGMNSHMILEEYVDPRTTS
RSPRQTQQQLFVFSATNRDSLVRNLQGFSSYLKDHRDVSPVSLAYTLQVAKNQMKCRLAF
CADSVNEVIGSIDSWLSGLSSNRSVRFVDSASGATKEFSRRELSQAIESAELETLAEYWT
NGSTVDWFALHGLNDQAALGAMIKVRIPAYQFEKKRCWFEVLEDAPSVIDPLGNRNKYHP
LVRDNTSDLSGIRYSADLIEIEILDYLYRVKKQPQLITFSLLDAAIAVMKQADPQSGYTS
VRWELLAPIPVVPSQLCYAVALNDQTGQFSDVYISSTADASTPHQLCARVEFAVQAGDGR
RVLQQPFPAFANATVRESLSGAQVSKALEEHKIVFGDYVNAISELQLIGEQRYRVHLKAT
DYRHNHFARNTTFLSELGSALQQAVLYIALRQGLDHWSNYALCACNVQLDLASVSKVSSL
LFSLESSGQALRGTIALADKNGTLLSLLDDVYIANSQAIEPRAAKTIETASFRSQPVFLH
ETAESPRPVAAAGTESDGLGKAVSAIVAKLLKFDESEVDARTSFYEFGFDSIGLTQLSKE
VNETLGARITPAVFFDCENIEALCFYLKDQGVSGTSEEAPQNSASAVNQAATPVSRVEKP
EAERNHRLPHPHESIAVIGMAGRFPGAASVEALWSNLLNNQDSIQDFPYQRYNQDTQAAF
AGVACVKQGGYLDKVDGFDAAFFNISRVEAEFMDPQQRQVLEVVWHAVENAAYDPSQLPS
DTGVFIGVSNNDYRALLQKDQELDGYIATGNSHAMLANRVSFFLDIHGPSESIDTACSSS
LVAIHNACESLRSGSASFAIAGGVNLLLDIQGFAEPDHAGMLSLDGRCNTFSRNANGYVR
GEGVGVVILKPLSLAQKDGDNILAVIESSAHQHGGRAKSLTAPNAKSQAELLRTTLKKID
LSQLQYVEAHGTGTELGDPVEVNALKQAVTETHGLPIYLGALKSNIGHLESAAGVAGLIK
AVKVLSERTVPANLHCSPLNPYIELHDSRFVINERQSSLKASDQGIFAAVSSFGFGGSIA
SVVLRRYESNRTTARAHRAFSGHEVVLVLSAKTRRGLVSQAINLRQHLSSHPEQIEEVAY
TLQVGRAELSYRLSIVAMDSADGLSKLTRFIESEAALSDADFSTGANELNHVSIFTGHIK
GSKTEKMSNEAMPKLLTLDNANMVAERFVKGVKFNWNLLYGGARPNRVVLPGYPFEQQRY
WLPKDQVTTWYDVDNFSNEQFVEHSFYENLLDRVLLDDLDTETVLQLLRKD