Protein Info for Psyr_4248 in Pseudomonas syringae pv. syringae B728a

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 824 PF13402: Peptidase_M60" amino acids 125 to 379 (255 residues), 131.7 bits, see alignment E=1.9e-42

Best Hits

KEGG orthology group: None (inferred from 100% identity to psb:Psyr_4248)

Predicted SEED Role

"FIG00960055: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q4ZNJ4 at UniProt or InterPro

Protein Sequence (824 amino acids)

>Psyr_4248 hypothetical protein (Pseudomonas syringae pv. syringae B728a)
MDDRHPHAASSVAASAVQAQTRWQAFGFGSAESHRERHARARAHTDFQPTNIYVTKGDQL
EITATSLYMNRVSAVIGVPELDTPTSYPLQRGLNVLVATNTGLLGFTNLDPLGHVVLDIT
GQYNHVPFFRMDMTNLEWEQQMAQYSNAPVVLLTSPRAIVVVRYQSAQLYLTDPAKLMGN
FDDAISAQDGISGVINYSTTEWALDPSKHFYVEADRLYMFAMDGHMGFNGSAALARLLST
APEDGWGPWHESGHQRQLSPMTWGTGTGMTEVTVNLYSMAAQEVFLGRATGADSSYAPMK
EYLASSLREYDNIKDSGHKLVMLWQLRLSFGTSFYPQLHQRYRLMHNPPTVSDDKAQRFI
VETSLLSHVNLAEFFDRWGLYPNPETLNQIADLPALTLAIWETDADTTIPIPLPLSTYIP
ELAHILSSVNGTFQDRIKFTVAEQWYTPYRYEITLNGTLVASVDHGECVGCEAHIEEGIA
YVEASAPISEGDEASVKVFAGGKLYAVASTASRPILLFNIKAMFTDDRCAELRPGITQPR
LDVLFFNLDEEKTDELHGRLLNRAQRLLLQKTIRSVIVSAGGVQVTFEDEVFKNHDYTIL
LGATPYATLEKGYPSGSELANNAWICPCGVGHQEVTITAAGGIGKTYTLFSGNVEQAKIA
LPIRQLFTDHTMTRLAEGVDQASVDALYMTVNGNPIISVTNRAFYRSYLVIAQSMLLRLT
VAKVIRTDDVLDVYFEGDTFKNHNYKLFVNDLYASEITQGRAYYSTVSNRVWTSREKFEG
NDHCRVDVEYQGVVTTLYESNAADAMTASALQEGDVTQCGLEKF