Protein Info for Psyr_4202 in Pseudomonas syringae pv. syringae B728a

Annotation: Sodium:neurotransmitter symporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 478 transmembrane" amino acids 26 to 44 (19 residues), see Phobius details amino acids 52 to 76 (25 residues), see Phobius details amino acids 107 to 129 (23 residues), see Phobius details amino acids 164 to 183 (20 residues), see Phobius details amino acids 195 to 215 (21 residues), see Phobius details amino acids 236 to 258 (23 residues), see Phobius details amino acids 270 to 296 (27 residues), see Phobius details amino acids 316 to 339 (24 residues), see Phobius details amino acids 360 to 382 (23 residues), see Phobius details amino acids 415 to 437 (23 residues), see Phobius details amino acids 456 to 477 (22 residues), see Phobius details PF00209: SNF" amino acids 22 to 135 (114 residues), 67.2 bits, see alignment E=6.3e-23 amino acids 162 to 376 (215 residues), 62.9 bits, see alignment E=1.3e-21

Best Hits

KEGG orthology group: K03308, neurotransmitter:Na+ symporter, NSS family (inferred from 100% identity to psb:Psyr_4202)

Predicted SEED Role

"Sodium-dependent transporter family protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q4ZNP0 at UniProt or InterPro

Protein Sequence (478 amino acids)

>Psyr_4202 Sodium:neurotransmitter symporter (Pseudomonas syringae pv. syringae B728a)
MRDLFWLGVSIMSTDKVSVHGSWASRWVFILAATGSAVGLGSIWKFPYMVGAYGGGAFVL
VFLACIALIGIPVMIAETLIGRRSRLSPANALKTLAQEAGHSPRWSWGAFAGMITALLIL
SFYSVVGGWSLDYIIDMGRGDFQGVSPDQVGAYFGAVIADPWRLILWHTIFMLLSAVVIG
KGVEAGLEKSLRIMMPMLFLLMLALLGYSLTTGHFMEGVHFMFDFNPEKVLDGLLPAMGH
AFFSLSVGVGSIMVYGAYMTKGASISSTVVGIAMLDTFVSLLAGLALFPIVFAAGLNPSE
GPGLMFVTLPYAFGNVAFGQLMGIVFFVLVAVAAWSSAISLLEPMVAYLVERTRIRRAWV
TFWLAFTCWFVGLGTVFSFNIWQKAKFFVNDGGAFHLYHWGASTGLDFFGVIDFFTSRIM
LPLGGLCFVVFAGWVMSRETVRDELSIRSPLLFNLTYFLMRYVAPLGILVVFAAQLWK