Protein Info for Psyr_4038 in Pseudomonas syringae pv. syringae B728a

Annotation: YD repeat protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 881 TIGR03696: RHS repeat-associated core domain" amino acids 565 to 644 (80 residues), 86.5 bits, see alignment E=1.3e-28

Best Hits

KEGG orthology group: K11021, insecticidal toxin complex protein TccC (inferred from 100% identity to psb:Psyr_4038)

Predicted SEED Role

"Putative insecticidal toxin complex" in subsystem cAMP signaling in bacteria

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q4ZP54 at UniProt or InterPro

Protein Sequence (881 amino acids)

>Psyr_4038 YD repeat protein (Pseudomonas syringae pv. syringae B728a)
MNTTLHQHTPDVRAVDPRGLAIGNIAYWRSEAQQAMERRITRKTYNAAGHVSTQRDPRLD
APNLTTTYSLSGQPILIDSVDAHWRLLLLGEAGQTISGWDSNANQRHFEYDPLMRPVSVT
EQHQVVERFAYGGPDSASHNLCGRLSRHDDTAGTSLSPDHGLSGKVLNQHRYFLRVSVTP
DWPLAEAERDALLEPVVLQTCWRFNALGDALAQTDAMGNTQAFGMTVAGQLKAAGLTLAG
ASQPQTLVSAIDYDAFNQVEQETAGNGVVSRYVYDLQDGRLIELSALSADGSVLQKLNYS
YDPAGNVLLINDASQPDRYCDNQLIEPISRYRYDTLYQLIEATGREVRNGASHGPALPGL
QPVPTLDPCQVSNYKQHYSYDAAGNLLQMRHEGARNFTRNMHVAPDSNRSLPDDDGDVDF
ATSFDANGNLLQLVRGQVMGWDVRNQLQHITTVQREDGSSDDERYVYDGQGQRCRKISTA
QASGRMLINEVRYLPGLEIRTTADGEILHVITAQAGRNSVRVLHWKAGKPGIITNDQVRY
SLGDHLGSSTLELDQQGGLISQESYYPFGGTAWWAARSAVEAKYKTVRYSGKERDASGLY
YYGFRYYAPWLQRWISPDPAGDVDGLNLYGYVKNSPITYYDRLGYMGKHALESPPSPARR
KPITSNSYALENQDARPGVLWGDQEPFLGPAYTLPDRYLVSGLEERLAAVDKRSGEATAI
VATMFDHNSSLAYGPYVVESKHLQKEDDFLNEYAPNEWTFRSNYKRSGSNDYHANDVVRY
QYRTIAQKTNTHGVLPSVIKNSFVVNNETLTKTLTIENKTPEMLQTFLQETPNGKRTQRV
LDDFGMEALWVDRQGDSEFPFADFIVAVRPKQQSYSQTGFY