Protein Info for Psyr_4021 in Pseudomonas syringae pv. syringae B728a

Annotation: RDD

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 241 transmembrane" amino acids 42 to 64 (23 residues), see Phobius details amino acids 70 to 92 (23 residues), see Phobius details PF06271: RDD" amino acids 35 to 149 (115 residues), 76.3 bits, see alignment E=1.4e-25

Best Hits

KEGG orthology group: None (inferred from 100% identity to psb:Psyr_4021)

Predicted SEED Role

"INTEGRAL MEMBRANE PROTEIN (Rhomboid family)"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q4ZP71 at UniProt or InterPro

Protein Sequence (241 amino acids)

>Psyr_4021 RDD (Pseudomonas syringae pv. syringae B728a)
MSSRPASPRNAALPTPLDTRIEIETPEGIDMLLRPAGLVSRALAFGIDFAIRAALVGLFF
VLLQLLDKLGMGLAALVFFLVNWWYMVLFEVLNQGRTPGKRLLGLRVVHDDGTPIDWSSS
LIRNLLRFVDMLPLGYGLGAITCLNHPFFKRLGDLAAGTLVIYSDRPVARPTLPQADPVI
VPFALHLDEQRAVLGLAERQAELSSARTQELAAILAEPLRVSADTAVAHVNGIARNLLGP
T