Protein Info for Psyr_3984 in Pseudomonas syringae pv. syringae B728a

Annotation: DNA helicase related protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1087 transmembrane" amino acids 781 to 800 (20 residues), see Phobius details PF13086: AAA_11" amino acids 789 to 850 (62 residues), 30.5 bits, see alignment 6.6e-11 PF13087: AAA_12" amino acids 960 to 1062 (103 residues), 50.4 bits, see alignment E=4.4e-17

Best Hits

KEGG orthology group: None (inferred from 100% identity to psb:Psyr_3984)

Predicted SEED Role

"DNA helicase related protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q4ZPA8 at UniProt or InterPro

Protein Sequence (1087 amino acids)

>Psyr_3984 DNA helicase related protein (Pseudomonas syringae pv. syringae B728a)
MDQESIVRYWHAVELLQPQSAPKLKKRANRYEAFIHDTLIQRPLLPWTPESIVSQQALPK
KRIWSHTLYAHLYDSRLVAEKLDAMYGADQGYQEPRFRESAVFAAKFTMAGRLVDDSLVL
SSEAWFLGRVLTGKDWTRGFETDQKTVRERANTLFEGEVSSADLRELTHWTLQFLGLGDF
FGEMDHHYFRFRSQPVKPDKPESEDDPLNSFLLDDLADVADAISRGVKSEPLDQYLRYHD
PELRLHMDDKRASLPLMGRLMPDAYASSCWPTEHHLGLVHSQQLAVNTIQSTLADGQGLL
GVNGPPGTGKTTLLRDLIAAIITSRADAFAKLRRASDAFASDGREAANDGGRQQYSFRLN
PALYGFEIVVASSNNGAVENVTLELPQRDKIDDSWLPEAEYFAELGELVSDKPAWGLISG
ALGSKARRNKFVDRYFYGQRPFGSGAEVAVEVEDETEVDPDEDVDNIVEALFSASSAEME
NADDSENQSEDALPEEEKGPKGFWGWLNVSAEVNAVRSPEQRQALWQQAVSDYEAIKAQE
RKACSDASRIRELILAILEVRKKIAEDSEKLRSFEQSLIEIANELLRLDNEEGGPANMAL
KTCLDALGELPRRPGFWSNLFSLGNARRDWNAARELLEGQRDIAKVEFERITRLTQQLDI
DKVQAQRTITEARRVLQGSQQQDQTLTRDAMELATIHQAEHLLAWLKDNAIGDGDAIELA
EPWRIQGWRKARARVFIQALKLHQTFFELEASRLRSNLFMINSLLTGSRFQGLSRDAIRS
AWASLFMVVPVLSSTFASFARSFGSLGASEIGWLLVDEAGQAAPQQAVGALWRSRRALLV
GDPLQLKPIVTVSDAVLEHMRTRYGVDAHWIPNQKSAQVLADEATPWGRMAGPAGGKTWV
GLPLVVHRRCDKPMYALANLIAYDGAMVYGTIAPHADKETLASLPTGWIHVSGASEGNWV
PAEGQVLRDLLKRLHGDGVEAKDISVITPFKAVQQNLKRMLRGKLVSGTIHTMQGKEASI
VIVVLGGNTAGAGARDWAVSEPNLLNVAATRAKRRLYVIGDRNDWKHRQLFCDVMDLLPL
QDIQAHR