Protein Info for Psyr_3977 in Pseudomonas syringae pv. syringae B728a

Annotation: Urea amidolyase-related protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1488 PF00289: Biotin_carb_N" amino acids 1 to 110 (110 residues), 138.8 bits, see alignment 4.4e-44 PF02786: CPSase_L_D2" amino acids 116 to 319 (204 residues), 207.7 bits, see alignment E=6.7e-65 PF07478: Dala_Dala_lig_C" amino acids 142 to 291 (150 residues), 41.7 bits, see alignment E=4.5e-14 PF02785: Biotin_carb_C" amino acids 338 to 446 (109 residues), 106.4 bits, see alignment 3.8e-34 TIGR00724: biotin-dependent carboxylase uncharacterized domain" amino acids 455 to 759 (305 residues), 282.8 bits, see alignment E=3e-88 PF02626: CT_A_B" amino acids 478 to 750 (273 residues), 316 bits, see alignment E=1.1e-97 PF02682: CT_C_D" amino acids 1090 to 1309 (220 residues), 133.6 bits, see alignment E=3.5e-42 PF00364: Biotin_lipoyl" amino acids 1426 to 1485 (60 residues), 50.6 bits, see alignment (E = 6.2e-17)

Best Hits

Predicted SEED Role

"Urea carboxylase (EC 6.3.4.6)" in subsystem Urea decomposition (EC 6.3.4.6)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 6.3.4.6

Use Curated BLAST to search for 6.3.4.6

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q4ZPB5 at UniProt or InterPro

Protein Sequence (1488 amino acids)

>Psyr_3977 Urea amidolyase-related protein (Pseudomonas syringae pv. syringae B728a)
MFDKLLIANRGAIACRILRTLRTLQVKGVAVYSEADAASLHLMQADEAHSLGEGGAAGTY
LAVDKILAIANASGTKAIHPGYGFLSENAAFAQACEDAGIAFVGPTPEQLRVFGLKHTAR
ALAKQHGVPMLEGTELLDSLESAIAAARTIGYPVMLKSTAGGGGIGMRVCRSAGELADSF
EAVKRLGQNNFSDAGVFIEKYIQRARHLEVQVFGDGQGEVLALGVRDCSVQRRNQKVLEE
TPAPNLPHGMAEELCAAAVKLARAVNYRSAGTVEFVFDSEDQRFYFLEVNTRLQVEHGVT
EQVWGVDLVSWMVQLAAGDLPPLDQLQAGLKPLGHAIQARLYAEDPGRDFQPCPGLLTAA
DFPPADGRTLRIDTWVEAGCEIPPYFDPMIAKLISWAPTREDASAGLIDALNETRLYGVE
TNRDYLRQIIADAPFASGQPWTRCLEDLVYRADTFEVLSGGTQTSVQDYPGRLGYWAVGV
PPSGPMDSRALRQGNELLGNPEGCAALEITMSGPLLRFNTDAVVAVTGAHIPITLDGQSC
AMNTALLVSAGSTLSLGTIAGAGVRSYLCVRGGLDVPDYLGSKSTFTLGQFGGHGGRALR
AGDVLHIAPLVDRRAGQRIADEALEALTDVRRMRVIYGPHAAPEYFTEAYIERFFATDWE
VHFNSSRTGVRLIGPKPEWVRADGGEAGLHPSNIHDNPYAIGAVDFTGDMPVILGPDGPS
LGGFVCPVTIIEADLWQLGQLKAGDRVRFTPVSVEACHAERCGSELAREDSIPDAENPST
VPPSSRASSLPQGTANSSRNELVREGSIPDAANPSTATPSSRASSLPQGTARLQGIANSR
RSELVRENSIPDAETPSTVPTSSRASQLPQGPANSRGSKLARESYMPDAENPSTATPSSR
ASSLPQGPANARRSELVRENSMPDAENPLTAPPSSRASSLPQDSANSRRSELAREGYMPD
AENPLTTPPSSRASQLPQGPANSRGSELAREGYIPDAENPLTAPPSSRASSLPQGTARLQ
GIANSRRSELVREGSIPDAENPSTATPSSRASSLPQGPANSSRSEVVRVEDLRTPVILDI
GQDDKRLVARLSGDTHLLLEIGAPELDLVLRLRGHALMLALEAKALAGVIDLTPGIRSLQ
VHYRPEQLPLRQLLDIVAGEWDAVCAAKDLQVASRIVHLPLSWDDPACQLAIEKYMTTVR
KDAPWCPSNLEFIRRINDLPNLDEVQRTVFDASYLVMGLGDVYLGAPVATPLDPRHRLVT
TKYNPARTWTAENSVGIGGAYMCVYGMEGPGGYQFVGRTLQMWNRYRDVAAFQGKPWLLR
FFDQIRFYPVSAEELVRIRRDFPLGRFALNIEHSTLNLADYQAFLSREAEGITAFRAQQN
AAFNAERERWIANGQADFQSDEGVAPNTEEQPLQPGQQGVDSHIAGNLWQVQVQPGARVE
AGDVLVILESMKMEIPLLAPIAGVVQDVRVQPGSAVRAGQRVVVLSAD