Protein Info for Psyr_3968 in Pseudomonas syringae pv. syringae B728a

Annotation: Protein of unknown function DUF112

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 504 transmembrane" amino acids 15 to 39 (25 residues), see Phobius details amino acids 45 to 72 (28 residues), see Phobius details amino acids 109 to 134 (26 residues), see Phobius details amino acids 140 to 162 (23 residues), see Phobius details amino acids 172 to 193 (22 residues), see Phobius details amino acids 205 to 225 (21 residues), see Phobius details amino acids 248 to 273 (26 residues), see Phobius details amino acids 307 to 325 (19 residues), see Phobius details amino acids 328 to 350 (23 residues), see Phobius details amino acids 356 to 376 (21 residues), see Phobius details amino acids 385 to 428 (44 residues), see Phobius details amino acids 434 to 452 (19 residues), see Phobius details amino acids 465 to 488 (24 residues), see Phobius details PF01970: TctA" amino acids 20 to 440 (421 residues), 491.4 bits, see alignment E=1e-151

Best Hits

KEGG orthology group: K07793, putative tricarboxylic transport membrane protein (inferred from 100% identity to psb:Psyr_3968)

Predicted SEED Role

"Tricarboxylate transport membrane protein TctA"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q4ZPC4 at UniProt or InterPro

Protein Sequence (504 amino acids)

>Psyr_3968 Protein of unknown function DUF112 (Pseudomonas syringae pv. syringae B728a)
MDTFGYLGQGFGVALTPYNLITALCGTLIGTVVGLLPGLGPINGVALLIPIAFALGLPPE
SALILLAAVYLGCEYGGRISSILLNIPGEASTVMTTLDGYPMARQGLAGVALSLSAWSSF
IGAFIATCGMVLFAPLLAKWAIAFGPAEYFVLMVFAIVCLGGMAGDRPLKTFIAALIGLF
LSAVGIDANSGVYRFTGDNIHLTDGIQFVVLVLGLFSISEILLLLEKTHRGQEAVKATGR
MMFNVKEAAAVFVVNIRCGLLGFILGVLPGAGATLASAVAYMTEKRIAGAGGKFGQGDMR
GLAAPETAIGATACGALVPMLTLGVPGSGTTAVMIGALSLYNITPGPMLFQQQPDIVWGL
IASLFIANIMLVILNIPMIRIFTRILAVPNWALVPVIAIITGIGVYAVHATTFDLFLMVG
IGIFGYILRKLDFPLSPILLGFILGGLMEQNLRRALSISNGELGILWSSPITLGVWVVTV
FMLLFPLLRIWRKRAKQQAAATHG