Protein Info for Psyr_3827 in Pseudomonas syringae pv. syringae B728a

Annotation: ABC transporter, transmembrane region:ABC transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 610 transmembrane" amino acids 39 to 62 (24 residues), see Phobius details amino acids 84 to 105 (22 residues), see Phobius details amino acids 161 to 179 (19 residues), see Phobius details amino acids 185 to 204 (20 residues), see Phobius details amino acids 267 to 293 (27 residues), see Phobius details amino acids 295 to 314 (20 residues), see Phobius details PF00664: ABC_membrane" amino acids 43 to 303 (261 residues), 51.4 bits, see alignment E=1.3e-17 PF00005: ABC_tran" amino acids 379 to 532 (154 residues), 117.5 bits, see alignment E=7.3e-38

Best Hits

Swiss-Prot: 52% identical to Y1051_HAEIN: Uncharacterized ABC transporter ATP-binding protein HI_1051 (HI_1051) from Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)

KEGG orthology group: K06147, ATP-binding cassette, subfamily B, bacterial (inferred from 100% identity to psb:Psyr_3827)

Predicted SEED Role

"Lipid A export ATP-binding/permease protein MsbA" in subsystem ZZ gjo need homes

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q4ZPR5 at UniProt or InterPro

Protein Sequence (610 amino acids)

>Psyr_3827 ABC transporter, transmembrane region:ABC transporter (Pseudomonas syringae pv. syringae B728a)
MLYRRFEKLIDIFKDAPTAAPPNTVFAFYLYYLRQVWPTFTALLVVGLIGALIEVSLFSY
LSRIIDLAQTTPPENFFSIHGSELIWMVVVALLLRPIFVGLHDLLVHQTISPGMTNLIRW
QNHSHVLKQSVNFFQNDFAGRIAQRIMQTGNSLRDSAVQTVDALWHVLIYAISAMVLFAE
ADWRLMIPLGTWIAAFILSLMYFVPRVKQRSVDSSDARSRLMGRIVDGYTNITTLKLFAH
TNHEQQYAREAMRDHTEKSQLAGRVVTSMDTTITTMNGILIVTTTGLALWLWTQSIISVG
AIALATGLVIRIVNMSGWIMWVVNGIFENIGTVQDGLESISQPVTVNDKPGALPLKIENG
GVRFDGVDFHYGNGNGIIHNLNLDIKPGEKIGLIGPSGAGKSTLVNLLLRMYDVQGGRIL
IDGQDISEITQESLRAQIGMITQDTSLLHRSIRENLLYGNPHATDEQLWESIHKARADEF
IPLLSDSEGRTGFDAHVGERGVKLSGGQRQRIAITRVLLKDAPILIMDEATSALDSEVEA
AIQESLETLMQGKTVIAIAHRLSTIARMDRLVVLEKGQIAETGTHSELLAHGGLYARLWQ
HQTGGFVGVD