Protein Info for Psyr_3771 in Pseudomonas syringae pv. syringae B728a

Annotation: conserved hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 387 signal peptide" amino acids 1 to 25 (25 residues), see Phobius details PF07995: GSDH" amino acids 45 to 382 (338 residues), 468.8 bits, see alignment E=5.6e-145

Best Hits

Swiss-Prot: 60% identical to YLII_ECOLI: Aldose sugar dehydrogenase YliI (yliI) from Escherichia coli (strain K12)

KEGG orthology group: None (inferred from 100% identity to psb:Psyr_3771)

MetaCyc: 60% identical to aldose sugar dehydrogenase YliI (Escherichia coli K-12 substr. MG1655)
1.1.5.-

Predicted SEED Role

"Soluble aldose sugar dehydrogenase, PQQ-dependent (EC 1.1.5.-)" (EC 1.1.5.-)

Isozymes

No predicted isozymes

Use Curated BLAST to search for 1.1.5.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q4ZPX0 at UniProt or InterPro

Protein Sequence (387 amino acids)

>Psyr_3771 conserved hypothetical protein (Pseudomonas syringae pv. syringae B728a)
MLRKNLIATLCTAAILSLPLTASAATETYKSELGTVTVTPVVEGLDHPWALAFLPDRQGM
LVTERSGNLRVVSADGKLSAPLSGVPQVWAQKQGGLLDVVLSPDFAKDRMVYLTYSEGSG
KTAAEGDTAGTAAGRGRLSKDMTRLEDFEVIFRQEPKLSVGNHFGARMVFDRDGYLFIAL
GENNQRPTAQDLDKLQGKIVRIYPDGSVPKDNPFVGQKGVRPEIWSYGHRNQQGAALDPW
TGTLWTNEHGPKGGDELNIIERGANYGWPIATHGIDYSGQPISESKGKVVEGTKIPFQVW
EVSPGLSGMAFYDHSLFKAWDHSVFIGALATEELIRLQFENDKIVHEERLLKDMKQRIRD
VRQGPDGYLYLLTDDDKGSLLKVGLAQ