Protein Info for Psyr_3596 in Pseudomonas syringae pv. syringae B728a

Annotation: Selenoprotein W-related protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 PF10262: Rdx" amino acids 7 to 80 (74 residues), 109.5 bits, see alignment E=3.7e-36 TIGR02174: selT/selW/selH selenoprotein domain" amino acids 9 to 79 (71 residues), 72.6 bits, see alignment E=1.3e-24

Best Hits

KEGG orthology group: K07401, selenoprotein W-related protein (inferred from 99% identity to psp:PSPPH_3607)

Predicted SEED Role

"SelT/selW/selH selenoprotein domain"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q4ZQE4 at UniProt or InterPro

Protein Sequence (100 amino acids)

>Psyr_3596 Selenoprotein W-related protein (Pseudomonas syringae pv. syringae B728a)
MPAEKPEVIITYCIQCQWLLRAAWLAQELLSTFSDDLGKVSLQPGTGGVFRITCDGVQLW
ERKADGGFPEAKVLKQRLRDQIDPARDLGHNDRHTPASPQ