Protein Info for Psyr_3453 in Pseudomonas syringae pv. syringae B728a

Annotation: flagellar protein FliJ, putative

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 149 TIGR02473: flagellar export protein FliJ" amino acids 7 to 145 (139 residues), 113.7 bits, see alignment E=4.7e-37 PF02050: FliJ" amino acids 22 to 143 (122 residues), 117.2 bits, see alignment E=2.7e-38

Best Hits

KEGG orthology group: K02413, flagellar FliJ protein (inferred from 100% identity to psp:PSPPH_3379)

Predicted SEED Role

"Flagellar protein FliJ" in subsystem Flagellum

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q4ZQT7 at UniProt or InterPro

Protein Sequence (149 amino acids)

>Psyr_3453 flagellar protein FliJ, putative (Pseudomonas syringae pv. syringae B728a)
MAQSRAARLAPVVEMAEAAERTAAQRLGHFQGQVNLANNKLQELDQFRQDYQQQWLQRGS
AGVSGQWLLGYQRFLSQLDVAVAQQYKSLEWHKANLDRARSAWQDCYARVEGLRKLVQRY
MDEARRLEDKREQKLLDELSQRLPRHEQF