Protein Info for Psyr_3388 in Pseudomonas syringae pv. syringae B728a

Annotation: Cytochrome c-type biogenesis protein CcmF

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 657 transmembrane" amino acids 6 to 29 (24 residues), see Phobius details amino acids 42 to 62 (21 residues), see Phobius details amino acids 95 to 113 (19 residues), see Phobius details amino acids 122 to 143 (22 residues), see Phobius details amino acids 178 to 198 (21 residues), see Phobius details amino acids 210 to 230 (21 residues), see Phobius details amino acids 250 to 266 (17 residues), see Phobius details amino acids 276 to 295 (20 residues), see Phobius details amino acids 313 to 332 (20 residues), see Phobius details amino acids 353 to 375 (23 residues), see Phobius details amino acids 394 to 414 (21 residues), see Phobius details amino acids 421 to 443 (23 residues), see Phobius details amino acids 449 to 469 (21 residues), see Phobius details amino acids 490 to 509 (20 residues), see Phobius details amino acids 616 to 634 (19 residues), see Phobius details TIGR00353: cytochrome c-type biogenesis protein CcmF" amino acids 53 to 639 (587 residues), 784.8 bits, see alignment E=3.1e-240 PF01578: Cytochrom_C_asm" amino acids 89 to 296 (208 residues), 188.1 bits, see alignment E=1.6e-59 PF16327: CcmF_C" amino acids 316 to 636 (321 residues), 409.7 bits, see alignment E=9.5e-127

Best Hits

Swiss-Prot: 84% identical to CCMF_PSEFL: Cytochrome c-type biogenesis protein CcmF (ccmF) from Pseudomonas fluorescens

KEGG orthology group: K02198, cytochrome c-type biogenesis protein CcmF (inferred from 100% identity to psb:Psyr_3388)

Predicted SEED Role

"Cytochrome c heme lyase subunit CcmF" in subsystem Biogenesis of c-type cytochromes or Copper homeostasis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q4ZR02 at UniProt or InterPro

Protein Sequence (657 amino acids)

>Psyr_3388 Cytochrome c-type biogenesis protein CcmF (Pseudomonas syringae pv. syringae B728a)
MIPELGHLAMIMALGFALVQAIIPLIGAWRGDRLWMSLARPAAWGQFSFLIFAFGCLTYA
FMVDDFSVAYVAQNSNTALPWYYKFSAVWGAHEGSLLLWALILGGWTFAVSVFSRQLPQV
MLARVLAVMGMISLGFLSFLILTSNPFARLLPQMPANGRDLNPLLQDIGLIVHPPMLYMG
YVGFSVAFAFAIAALLGGRLDAAWARWSRPWTLVAWAFLGIGISLGSWWAYYELGWGGWW
FWDPVENASFMPWLVGTALIHSLAVTEKRGVFKSWTVLLAIAAFSLSLLGTFLVRSGVLT
SVHAFASDPARGVFILMFLLVVVGGSLTLFAIRAPVVKSQVGFGLWSRETLLLGNNLLLV
VAASMILLGTLYPLVIDAMSGAKMSVGPPYFNTLFVPLMGLLLVVMAVGVLVRWKDTPLK
WLLGMLAPVLVGSVVLAVLAGLLLGDFQWAVLATLMLAAWVLLAGVRDLLDKTRHKGLIS
GARSLTRSYWGMQLAHLGIVVCALGVVLSSQNSAERDLRMAPGESTELGGYTFAFEGARH
YEGPNFTSDRGTVRVLRNGVQLTELHPEKRFYTVQQSMMTEAGIDAGFSRDLYVALGEPL
GDGAWAVRVHVKPFVRWIWLGGLLTGLGGVLAALDRRYRTRVKNKVREALGMSGAAQ