Protein Info for Psyr_3371 in Pseudomonas syringae pv. syringae B728a

Annotation: Oxidoreductase, molybdopterin binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 256 PF00174: Oxidored_molyb" amino acids 101 to 245 (145 residues), 105 bits, see alignment E=1.7e-34

Best Hits

Swiss-Prot: 57% identical to YEDY1_AZOOP: Putative protein-methionine-sulfoxide reductase subunit YedZ1 (yedY1) from Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS)

KEGG orthology group: K07147, (no description) (inferred from 100% identity to psb:Psyr_3371)

Predicted SEED Role

"COG2041: Sulfite oxidase and related enzymes"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q4ZR19 at UniProt or InterPro

Protein Sequence (256 amino acids)

>Psyr_3371 Oxidoreductase, molybdopterin binding protein (Pseudomonas syringae pv. syringae B728a)
MNEPRKRTTQRIILEPAQQRQLVDIQRRSFLRAGLTVGAMSMLTGCNLQDGDQVDKVLWA
MSRWNDRVQAWLFNGQKLAPTYSKAQLTNPFPFNAFYPEYNVPELDLADYQLAVSGLVRD
KQPWTLEALRKLPQRTDITRLICIEGWSAIGQWGGVPLKTFLEYIGADTTARFVGFKCAD
RYYSSLDMPTALHPQTLLALDFGEVALPPDYGYPLRVRVPTKLGFKNPKHIVEIFVSNEN
PGGYWEDQGYNWFSGI