Protein Info for Psyr_3358 in Pseudomonas syringae pv. syringae B728a

Annotation: transmembrane pair

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 159 transmembrane" amino acids 24 to 44 (21 residues), see Phobius details amino acids 50 to 70 (21 residues), see Phobius details amino acids 91 to 114 (24 residues), see Phobius details amino acids 120 to 142 (23 residues), see Phobius details PF05232: BTP" amino acids 17 to 80 (64 residues), 90.2 bits, see alignment E=3.5e-30 amino acids 85 to 148 (64 residues), 83.2 bits, see alignment E=5.3e-28

Best Hits

KEGG orthology group: None (inferred from 100% identity to psb:Psyr_3358)

Predicted SEED Role

"FIG00953523: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q4ZR32 at UniProt or InterPro

Protein Sequence (159 amino acids)

>Psyr_3358 transmembrane pair (Pseudomonas syringae pv. syringae B728a)
MSNSQPHIDQHPGVASKTLRERALHAALFEVGGVILVAPLLAWLMNQSLAMMGAMTVMIS
TIAMLWNMTYNTLFDRLRKRYGFSMSLTVRVLHATGFEAGLILAVVPLAAWWLTISLMEA
FWLDIGLLLMFLPYTLLFNWAYDTLRERLVQRRLARCEV