Protein Info for Psyr_3328 in Pseudomonas syringae pv. syringae B728a

Annotation: GGDEF domain protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 548 transmembrane" amino acids 41 to 61 (21 residues), see Phobius details amino acids 296 to 316 (21 residues), see Phobius details amino acids 322 to 340 (19 residues), see Phobius details PF02743: dCache_1" amino acids 74 to 298 (225 residues), 60.4 bits, see alignment E=1.9e-20 TIGR00254: diguanylate cyclase (GGDEF) domain" amino acids 360 to 527 (168 residues), 172.4 bits, see alignment E=3.5e-55 PF00990: GGDEF" amino acids 364 to 525 (162 residues), 158.5 bits, see alignment E=1.2e-50

Best Hits

KEGG orthology group: None (inferred from 100% identity to psb:Psyr_3328)

Predicted SEED Role

"FOG: GGDEF domain"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q4ZR62 at UniProt or InterPro

Protein Sequence (548 amino acids)

>Psyr_3328 GGDEF domain protein (Pseudomonas syringae pv. syringae B728a)
MFRLSVAKVWKLHRRFHCQFDDNPMKPLSFISTRLTPSALSKALIGFIALVCLSLIMATA
WQMNQSKLERLATARIAVSNIVLAAEQQAQDTLQQADNTLRDLAERVEQDGAAGEQQSRL
TRLMAQDLVNVKGLQGLFIYDAQGNWVANSFAKGVQTRNNEDRAYFIYHRDNPDPSIHIG
SIVESRNTGDMIIPVSRRINAADGSFAGVALATVPVTYFQAFFQRMDVDDKGVIFLALNN
GDLLARRPTLTALMTTNVAKGDIFTRYLPYSDSGTAVINSVVDGVERIYAYRRVSGLPIV
AAAGISSQHVFAPWWAYAQRSMTITGIIILALVFLGVLLYRQIQQLITAEGELNIARNDL
EIIAHTDSLTHLANRRCFDTALQQEWGRASRNDATIAIILLDIDWFKQYNDTYGHLQGDD
CLRQVAGLIGNSLDRSGDMAARYGGEEFVILLPETDLAGALKLAEKIRSSIEASCIEHSS
SPLGRLSISSGVVAINAAEKKDAHTAALKEADRLLYLAKTKGRNRVEGRSIQGWQADSHF
ARVSSASP