Protein Info for Psyr_3311 in Pseudomonas syringae pv. syringae B728a

Annotation: Virulence factor MVIN-like protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 471 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details transmembrane" amino acids 47 to 65 (19 residues), see Phobius details amino acids 86 to 107 (22 residues), see Phobius details amino acids 123 to 142 (20 residues), see Phobius details amino acids 149 to 170 (22 residues), see Phobius details amino acids 178 to 199 (22 residues), see Phobius details amino acids 235 to 238 (4 residues), see Phobius details amino acids 260 to 281 (22 residues), see Phobius details amino acids 298 to 321 (24 residues), see Phobius details amino acids 333 to 355 (23 residues), see Phobius details amino acids 364 to 406 (43 residues), see Phobius details amino acids 418 to 436 (19 residues), see Phobius details amino acids 442 to 463 (22 residues), see Phobius details PF03023: MurJ" amino acids 28 to 431 (404 residues), 138.9 bits, see alignment E=2e-44 PF14667: Polysacc_synt_C" amino acids 334 to 464 (131 residues), 34.7 bits, see alignment E=1.8e-12

Best Hits

KEGG orthology group: None (inferred from 100% identity to psb:Psyr_3311)

Predicted SEED Role

"Extracellular Matrix protein PslK"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q4ZR79 at UniProt or InterPro

Protein Sequence (471 amino acids)

>Psyr_3311 Virulence factor MVIN-like protein (Pseudomonas syringae pv. syringae B728a)
MLGSTLWLTLATLTGLAAGFAREWLLVAAWGAGGQSDAFLVSMFLPEALRMSLAAGLLSA
AALPLYQQRTAERQQRWLGGMAPRLLLTGLAVSVVLLLSAGGLVRLIGPGLDADGYAQAA
SGLRWLAWCAPGFMLHALFCVPLQARSRFVLAGLGSLLFNLPPVIYLATFSHASTSTGLA
SACVLGSVLMPGVLLPALYRSGWRPWQWQSEAGAMRELLQRIGPLLSSNLASQGLALLER
MVASLLGEGAVTWVNLARKLINLPLIALMSLNQVLLGLMSGSAGDQRLSLLKRGLGSATL
LTLPAVAGLIGAAGALVTLLLPNQTQGGPLPELLAWFAAPLMFGAWNALLARYAYAAGDT
RLPLNCELIGSLCNALLLGALPFAFGLTGIALAALGGALVTGVLLMRSQSLLDVLPWRSH
WLLASLLMAIAALSLHPLHDTWLQLGLSCVYGALLLVGLALWLKPWRNVSA