Protein Info for Psyr_3296 in Pseudomonas syringae pv. syringae B728a

Annotation: MOSC:MOSC, N-terminal beta barrel

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 269 PF03476: MOSC_N" amino acids 1 to 120 (120 residues), 106 bits, see alignment E=1.1e-34 PF03473: MOSC" amino acids 143 to 266 (124 residues), 66.1 bits, see alignment E=3.3e-22

Best Hits

KEGG orthology group: K07140, (no description) (inferred from 100% identity to psb:Psyr_3296)

Predicted SEED Role

"Flavodoxin reductases (ferredoxin-NADPH reductases) family 1" in subsystem Anaerobic respiratory reductases

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q4ZR94 at UniProt or InterPro

Protein Sequence (269 amino acids)

>Psyr_3296 MOSC:MOSC, N-terminal beta barrel (Pseudomonas syringae pv. syringae B728a)
MLRLSSLYRFPLKSCKAESMQRASFDALGLAGDRRWMLVDAGNGRFFTQRALPHMSQLSV
LWNASGGVTLSAPGFEPLDVAVPPDIDLNLRGVTVWRDSLQVPDAGDEAAEWVSRFIGKP
TRMVYLPAERARWIPGGYQTVNDRVSFADGFPLLLIGQGSLDDLSARMGRPMEMLRFRPN
LVIEGAEAFAEDSWKRIRIGDIEFQLLTPCARCILTTVDPATGERSADREPFATLKTYRE
VEGNVLFGQNVVNEGLGELEVGMSVEVLE