Protein Info for Psyr_3295 in Pseudomonas syringae pv. syringae B728a

Annotation: SLT

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 642 signal peptide" amino acids 1 to 25 (25 residues), see Phobius details PF00760: Cucumo_coat" amino acids 149 to 200 (52 residues), 24 bits, see alignment 3.8e-09 PF14718: SLT_L" amino acids 404 to 470 (67 residues), 65.2 bits, see alignment E=7.2e-22 PF01464: SLT" amino acids 486 to 596 (111 residues), 108.5 bits, see alignment E=2.3e-35

Best Hits

KEGG orthology group: K08309, soluble lytic murein transglycosylase [EC: 3.2.1.-] (inferred from 100% identity to psb:Psyr_3295)

Predicted SEED Role

"Soluble lytic murein transglycosylase precursor (EC 3.2.1.-)" (EC 3.2.1.-)

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 3.2.1.-

Use Curated BLAST to search for 3.2.1.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q4ZR95 at UniProt or InterPro

Protein Sequence (642 amino acids)

>Psyr_3295 SLT (Pseudomonas syringae pv. syringae B728a)
MRSRLFSLLSCLLLSATAVQTAHAVDLNQQRKYYDEAKRALAKGDSGPYQMYATALADYP
LEPYLEYDELTARLKTASNPEIEKFLAEHGDLPQANWMKLRWLRWLAERGDWQTFVKYYD
PKMKFVELDCLYGQYQLNSNKRAEGFASAEKLWMTGKTLPAACDGFFAQWAAAGQLTEQK
RWQRAKLAAQTRNYSLASTLVDSLNSLAPQGRLLLAVAQKPEMVSNPSQFAPVDEAMSDV
VGLGLRRLAKQDPQKALSMLDGYAATMHFSREEQVEIAKEIGLTLARRYDDRALEVMTRY
DPELRDDTVTEWRLRLLLRLGRWEDAYELARRLPKDLAATNRWRYWEARSLELAQPNSPL
IAALYKDVAKERDFYGFLAADRTQSPYQLNNKPLVLSQALINKVRNTPGVRRALEFHDRG
EIVNGRREWYHVSRLFNRDEMVAQAKLAYDMQWYFPAIRTISQAQYWDDLDIRFPMAHRD
TLVREAKVRGLHSSWVFAITRQESAFMDDARSGVGASGLMQLMPATAKETARKYSIPLAS
PQQVLDPDTNIQLGAAYLSSVHAQFNGNRVLASAAYNAGPGRVRQWLKGANHLAFDVWVE
SIPFDETRQYVQNVLSYSVIYGQKLNSPQPLVDWHERFFDDQ