Protein Info for Psyr_3233 in Pseudomonas syringae pv. syringae B728a

Annotation: FMN reductase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 193 PF02525: Flavodoxin_2" amino acids 1 to 92 (92 residues), 30.8 bits, see alignment E=2.3e-11 PF03358: FMN_red" amino acids 1 to 143 (143 residues), 127.4 bits, see alignment E=3.7e-41 TIGR03567: FMN reductase" amino acids 2 to 172 (171 residues), 246.1 bits, see alignment E=9.5e-78

Best Hits

Swiss-Prot: 67% identical to SSUE_PSEPK: FMN reductase (NADPH) (ssuE) from Pseudomonas putida (strain ATCC 47054 / DSM 6125 / NCIMB 11950 / KT2440)

KEGG orthology group: K00299, FMN reductase [EC: 1.5.1.29] (inferred from 100% identity to psb:Psyr_3233)

Predicted SEED Role

"FMN reductase (EC 1.5.1.29)" in subsystem Alkanesulfonate assimilation or Alkanesulfonates Utilization (EC 1.5.1.29)

MetaCyc Pathways

Isozymes

No predicted isozymes

Use Curated BLAST to search for 1.5.1.29

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q4ZRF7 at UniProt or InterPro

Protein Sequence (193 amino acids)

>Psyr_3233 FMN reductase (Pseudomonas syringae pv. syringae B728a)
MRVVSLSGSPSPKSRSGVVLAHAGRWLQSHGVEVTTLRIRDFNAEDLLFARFDSPQVLEL
IEAVSQADGLLIGTPVYKASFSGALKTLLDLLPERALHGKVVLPLATGGSIAHMLAVDYA
LKPVLSALKSQEVLHGIFAIDTQVSYDDNELGGTLDEILTERLHEGLEHFHHGLQRRLQA
RHKQAGGHLQLAL