Protein Info for Psyr_3222 in Pseudomonas syringae pv. syringae B728a

Annotation: Polysaccharide biosynthesis protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 504 transmembrane" amino acids 12 to 33 (22 residues), see Phobius details amino acids 40 to 60 (21 residues), see Phobius details amino acids 91 to 113 (23 residues), see Phobius details amino acids 125 to 145 (21 residues), see Phobius details amino acids 158 to 181 (24 residues), see Phobius details amino acids 188 to 207 (20 residues), see Phobius details amino acids 227 to 245 (19 residues), see Phobius details amino acids 264 to 283 (20 residues), see Phobius details amino acids 304 to 328 (25 residues), see Phobius details amino acids 348 to 368 (21 residues), see Phobius details amino acids 379 to 399 (21 residues), see Phobius details amino acids 405 to 424 (20 residues), see Phobius details amino acids 440 to 462 (23 residues), see Phobius details amino acids 468 to 486 (19 residues), see Phobius details

Best Hits

KEGG orthology group: None (inferred from 100% identity to psb:Psyr_3222)

Predicted SEED Role

"Polysaccharide biosynthesis domain protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q4ZRG8 at UniProt or InterPro

Protein Sequence (504 amino acids)

>Psyr_3222 Polysaccharide biosynthesis protein (Pseudomonas syringae pv. syringae B728a)
MPGKHSLIRNTLLNYGGQAYVLLIGILIMPFYLGHLGAEAYGLIGFFTLLQAWLQLLDAG
LSPSLVRAVAHGRDTPASKHYLGRLLRSFELIFLPMAMFSALLVCVASPWIAAHWLNANT
LQPDTLTHCITLMGIIIALRLYSTLYKSGIQGLEQHGWLNAANVSIATLRYFGGLVLVSQ
FSRDPQDFFEFQLAVGLIETLLFAGKARGQMPAPHWLTGLDWPLIKPLLPFAASLSLSAV
LWIVLTQVDKALLSNLLPLDQYGYFSLVALIATGIVMLTNPLVQTLLPRLTVLMAEGRRD
EMHALFLAANRLACTFLFPLAAVIALYAEPLILAWTGDPVAARWSRPVLGWYALGSAIMA
ASAFQFYLQYTYGRMHLHLWYSLISTLVSVPVMILAIHYQGVYGAALAWFFLRATSFAIW
PVIVHRHLAPGLHRQWLSDILRISAMTAAGLVVSAPVFNLIAGESRTSLLLALALSGLVT
LTLVAASHRPLASKLYVLFSKPST