Protein Info for Psyr_3221 in Pseudomonas syringae pv. syringae B728a

Annotation: DegT/DnrJ/EryC1/StrS aminotransferase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 373 PF01041: DegT_DnrJ_EryC1" amino acids 14 to 353 (340 residues), 296.7 bits, see alignment E=2.7e-92 PF01212: Beta_elim_lyase" amino acids 34 to 257 (224 residues), 29 bits, see alignment E=6.8e-11

Best Hits

KEGG orthology group: None (inferred from 100% identity to psb:Psyr_3221)

Predicted SEED Role

"Aminotransferase, DegT/DnrJ/EryC1/StrS family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q4ZRG9 at UniProt or InterPro

Protein Sequence (373 amino acids)

>Psyr_3221 DegT/DnrJ/EryC1/StrS aminotransferase (Pseudomonas syringae pv. syringae B728a)
MINVTKTYLGDIDQFKRYVEGIYARGWLTNHGPLARELTDRLKDYLGVRHIILTNNGTLA
LQVAYRALGLSGSAVTTPFSFVATSSSLQWEGIRPIFADIDAHTWNISPKHIENSIAEDT
TAIVATHVFGNPCDVQAIEHIAREHKLKVVYDGAHAFAVRHAGQSVLNHGDISTLSFHAT
KLFHTIEGGAIITNDDELARQAHLMCNFGISGVDRIDGIGINAKLNEFSAAMGLCILDNI
DSILEQRAEIADHYTSSLQDYLDLQTPQADSQLNHSYYPVALRDEQQLLSVRTALNQHKI
NPRRYFYPSLDTLEYLQPQPGQPVSRALSERVLCLPIYPGLLRSEQDLVIRTLIEACTVT
EADYRACTVARVC