Protein Info for Psyr_3210 in Pseudomonas syringae pv. syringae B728a

Annotation: Protein of unknown function UPF0118

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 354 transmembrane" amino acids 12 to 43 (32 residues), see Phobius details amino acids 63 to 85 (23 residues), see Phobius details amino acids 156 to 176 (21 residues), see Phobius details amino acids 211 to 233 (23 residues), see Phobius details amino acids 239 to 260 (22 residues), see Phobius details amino acids 266 to 290 (25 residues), see Phobius details amino acids 310 to 338 (29 residues), see Phobius details PF01594: AI-2E_transport" amino acids 11 to 336 (326 residues), 185.2 bits, see alignment E=9.5e-59

Best Hits

KEGG orthology group: None (inferred from 100% identity to psb:Psyr_3210)

Predicted SEED Role

"membrane protein, putative"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q4ZRI0 at UniProt or InterPro

Protein Sequence (354 amino acids)

>Psyr_3210 Protein of unknown function UPF0118 (Pseudomonas syringae pv. syringae B728a)
MNETTLQYKTLILLLVLVTIAFIWILLPFYGAVFWAVILGIIFAPVQRKLQIKFNWSRNL
TSLCTLTICLVIAILPVIVISALLVQEGTTLYKNVETGQLDIAGYLAEFKDLLPHSMQAL
LDRLGMGDLEGLRDKIAKGAMQGSQYLATQAFSFGQGTFDFVVSVFIMLYLLYFFLRDGQ
ELVRKIRTAFPLGEQQKRRLQLKFTRVVRATVKGNVVVAVTQGALGGFIFWMLDIPSALL
WAVIMAFLSLLPAVGAGIVWAPVAIYFLLSGMIWQGVVLGLFGVLVIGLVDNVLRPILVG
KDTKMPDYLILISTLGGMSVFGLNGFVIGPLVAALFMSSWGLFSGAKKPVKLPG