Protein Info for Psyr_3134 in Pseudomonas syringae pv. syringae B728a

Annotation: General substrate transporter:Major facilitator superfamily

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 428 transmembrane" amino acids 20 to 46 (27 residues), see Phobius details amino acids 52 to 72 (21 residues), see Phobius details amino acids 84 to 104 (21 residues), see Phobius details amino acids 110 to 128 (19 residues), see Phobius details amino acids 143 to 163 (21 residues), see Phobius details amino acids 169 to 188 (20 residues), see Phobius details amino acids 223 to 244 (22 residues), see Phobius details amino acids 264 to 285 (22 residues), see Phobius details amino acids 294 to 312 (19 residues), see Phobius details amino acids 319 to 340 (22 residues), see Phobius details amino acids 352 to 371 (20 residues), see Phobius details amino acids 380 to 402 (23 residues), see Phobius details PF07690: MFS_1" amino acids 26 to 320 (295 residues), 124.1 bits, see alignment E=6.4e-40 amino acids 281 to 411 (131 residues), 48.4 bits, see alignment E=6.7e-17 PF00083: Sugar_tr" amino acids 48 to 194 (147 residues), 59.5 bits, see alignment E=3e-20 amino acids 192 to 413 (222 residues), 48.5 bits, see alignment E=6.6e-17

Best Hits

KEGG orthology group: None (inferred from 100% identity to psb:Psyr_3134)

Predicted SEED Role

"Transporter, MFS superfamily"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q4ZRQ6 at UniProt or InterPro

Protein Sequence (428 amino acids)

>Psyr_3134 General substrate transporter:Major facilitator superfamily (Pseudomonas syringae pv. syringae B728a)
MFSWYRDVTSKERKTFWACFGGWSLDALEVQMFGLAIPALIAAFALTKGDAGLISAVTLV
TSALGGWVGGALSDRYGRVRTLQWMILWFSLFTFLSAFVTGFNQLLIVKALQGFGIGGEW
AAGAVLMAETIQSRYRGKVMATVQSAWAVGWGLAVVLFTLIYSFVPEDIAWRVMFFVGLL
PALMIIWVRRNVEEPDSFQRMQKSAAPKGSFFRSMAGIFRPELLRVTLLGGLLGLGAHGG
YHAVMTWLPTFLKTERNLSVLSSGGYLAVIIVAFWCGCVCSGLLIDRIGRRKNIMLFALC
CVVTVQCYLMLPLSNTQMLFLGFPLGFFAAGIPASLGSFFNELYPAEVRGAGVGFCYNFG
RVLSAVFPFLVGHMSQSMSLGSAIGIDAGIAYGVAMIAAFCLPETRGRNLEATPPVAEPL
DKGAAQQA