Protein Info for Psyr_3119 in Pseudomonas syringae pv. syringae B728a

Annotation: Major facilitator superfamily

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 448 transmembrane" amino acids 27 to 46 (20 residues), see Phobius details amino acids 58 to 77 (20 residues), see Phobius details amino acids 92 to 111 (20 residues), see Phobius details amino acids 118 to 139 (22 residues), see Phobius details amino acids 151 to 174 (24 residues), see Phobius details amino acids 186 to 206 (21 residues), see Phobius details amino acids 254 to 275 (22 residues), see Phobius details amino acids 295 to 313 (19 residues), see Phobius details amino acids 320 to 336 (17 residues), see Phobius details amino acids 342 to 363 (22 residues), see Phobius details amino acids 374 to 397 (24 residues), see Phobius details amino acids 409 to 428 (20 residues), see Phobius details PF07690: MFS_1" amino acids 32 to 394 (363 residues), 167.8 bits, see alignment E=1.7e-53

Best Hits

Swiss-Prot: 37% identical to RHMT_ECOLI: Inner membrane transport protein RhmT (rhmT) from Escherichia coli (strain K12)

KEGG orthology group: None (inferred from 100% identity to psb:Psyr_3119)

Predicted SEED Role

"Major facilitator family transporter"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q4ZRS1 at UniProt or InterPro

Protein Sequence (448 amino acids)

>Psyr_3119 Major facilitator superfamily (Pseudomonas syringae pv. syringae B728a)
MSTSNSRMADGTGSVLNSAVSKVKRHVLPLFVIMFIVNYIDRVNIGFVRSHMEHDLGIGA
AAYGLGAGLFFIGYALFEVPSNILLQKVGARIWLTRIMLTWGIVAACMAFIQTETHFYIL
RFLLGVAEAGFFPGVIYYFTRWLPGVERGKAIAIFLSGSAIASLISGPLSGLLLQITGFG
LKGWQWMYFIEGMFSVGLCFFVWFWLDSNPHDAKWLTREEQDALVNAIDAEQAAREAATP
VKASIGKLLKDGQIILFCLIYFFIQLTIYAATFWLPSIIRKMGSLTDFEVGMFNSIPWLL
SIIGMYVFASLSAKWKRQQAWVAIALLIAAAGMFMSTTGSPIFAFVAICFAALGFKSASS
LFWPIPQAYLDARIAAAVIALINSVGNLGGFVAPTTFGLLEEHTGSIQGGLYGLTATSII
AAIIVFAARNTPKPGATPVAAIQTPATH