Protein Info for Psyr_3101 in Pseudomonas syringae pv. syringae B728a

Annotation: Alpha/beta hydrolase fold protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 332 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details PF06342: DUF1057" amino acids 47 to 177 (131 residues), 32.7 bits, see alignment E=8.4e-12 PF12146: Hydrolase_4" amino acids 69 to 269 (201 residues), 57.2 bits, see alignment E=3.2e-19 PF12697: Abhydrolase_6" amino acids 70 to 325 (256 residues), 66.3 bits, see alignment E=1.3e-21 PF00561: Abhydrolase_1" amino acids 71 to 320 (250 residues), 77.1 bits, see alignment E=3.6e-25

Best Hits

KEGG orthology group: None (inferred from 100% identity to psb:Psyr_3101)

Predicted SEED Role

"hydrolase, alpha/beta fold family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q4ZRT9 at UniProt or InterPro

Protein Sequence (332 amino acids)

>Psyr_3101 Alpha/beta hydrolase fold protein (Pseudomonas syringae pv. syringae B728a)
MRAAKIAGMLMSLTLSGAALAETPGYGQQLEGFTYPHALHKFSFQSQGQTLEMGYMDVAP
SGKANGRTAVLMHGKNFCAATWEDTIKGLSAAGYRVVAADQIGFCTSTKPEHYQYSFQQL
SMNTHALLEKLGLDKVSVVGHSTGGMLATRYALLYPKQTEKLVMVNPIGLEDWKALGVPY
RSVDQWYERELKTTAEGIRAYEQKTYYDGRWKPEYDKWVDMLAGLNKGPGHKVVAWNSAL
IYDMIFTQPVFYEFPRLQVPTVLMIGDADTTAIGSDIAPPEVKAKIGNYKVLGKQVAQMI
PGARLVEFKGKGHAPQMEDPQGFNKALVSELQ