Protein Info for Psyr_3029 in Pseudomonas syringae pv. syringae B728a

Annotation: Rhs element Vgr protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 540 TIGR03361: type VI secretion system Vgr family protein" amino acids 11 to 466 (456 residues), 211.3 bits, see alignment E=1.1e-66 PF05954: Phage_GPD" amino acids 28 to 327 (300 residues), 169.5 bits, see alignment E=5.4e-54

Best Hits

KEGG orthology group: None (inferred from 100% identity to psb:Psyr_3029)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q4ZS09 at UniProt or InterPro

Protein Sequence (540 amino acids)

>Psyr_3029 Rhs element Vgr protein (Pseudomonas syringae pv. syringae B728a)
MRKDLQVPFMLAITDCQPDLHIINFAGHEALNETYRFDLWMIGSHPQLDVRSLLHREAFL
SFGESGGGRHGRIEHAARLHRGNRVSLYHLILVPDLQRLAQHRQRRAYQDRAIPQLIVRL
LEAHGIGTNAYRFEHVNGLYPARPLHIQYDESDLHLLQRLCEEEGMHFRFEHRRSGHRLV
FSDDPASFPAQPLPVRFKRPQASDVPRETLLHLAERLGFPQFSRQPADHPQPAHAPSSPH
DAHPLTIAANHAFQPPGLRGAISPREALSRQRGSRGLERLRCERSDVRGQSIDTALQCGE
VIQVLDHPEPLLNDQWLLTEVVHAGRQLQVLKGAAAHDALAILRILVEAQRSSPEAEQLQ
GNGYCNNFRVIPWATPFRPSISHPRPIVTGEHFATLQRNDNQPDPPGYRSIRFDWHAQGP
EDEPAQRWPVARVACPEIHRLPAGTRVRVRYLDNHPERPVICAALLANPGQDAVTAYPAD
CVRLANGQRLHINAHDGLTVRGRTAELRVDAQRILIVAHADQQSLKSGWRLSMKARMPSF