Protein Info for Psyr_3015 in Pseudomonas syringae pv. syringae B728a

Annotation: cobaltochelatase CobN subunit

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1254 TIGR02257: cobaltochelatase, CobN subunit" amino acids 1 to 1252 (1252 residues), 1737.9 bits, see alignment E=0 PF02514: CobN-Mg_chel" amino acids 138 to 1239 (1102 residues), 1320.2 bits, see alignment E=0

Best Hits

Predicted SEED Role

"CobN component of cobalt chelatase involved in B12 biosynthesis" in subsystem Coenzyme B12 biosynthesis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q4ZS23 at UniProt or InterPro

Protein Sequence (1254 amino acids)

>Psyr_3015 cobaltochelatase CobN subunit (Pseudomonas syringae pv. syringae B728a)
MHLLRTQPGGFVPDDNIADLGQTPAELVILCSGDSSLALLAEAARQLPEDYPSLRLANPM
QVQNHASVDLYVDEVLRHAKVILISLHGGIGYWRYGVERLMELAARGVQVILVPGDDRPD
PELSDLSTVSAAERDRLWQFLRQGGLQNALQLYNCMASRWLDRDYSWAEPAPLPRTAIYH
PRLASAQLADWQADWLAEQPVAALLFYRSHLQAANTGFIDEFCTRLQAQGINPLPIAVAS
LKEPGCFTQVEDWLDEAETELILNTTGFAQSSPEAPHLRPFRRNVPVIQAICAQDNEPAW
QASEQGLGARDLAMHIALPELDGRIISRPISFKDLAWRSERSQSDVVCYRAQPDRMDFVA
ELARRWIELARLPNGEKRVALILANYPTRDGRIGNGVGLDTPAAALNILRAMQAEGYPLA
PLPDTGTELIQQLLGGVTNDLDSIDQRPCQQSMALEEYLAAFNELPQENRDAVNARWGTP
DTDPMFRSGRMMIAGLRFGLTFIGIQPARGYQVDPSAVYHDPDLVPPHGYLAFYFWLRKA
YGAHAVVHVGKHGNLEWLPGKGVGLSQTCWPDAVLGAMPNIYPFIVNDPGEGAQAKRRTQ
AVIIDHLMPPLTRAETYGPLRNLELLADEFYEAQMLDPRRARELQRDILELVRETHIDRE
LALGENLDSDADAALWLPRLDTYLCDLKESQIRDGLHIFGQSPQGRLRIDTLLALLRIPR
GDGRGAQSSLLRALSKAFELDFDPLNCELAEPWTGPRPAALQHLSSDPWRSAGDARERLE
LYAAILIERVTQGEALTDLPAHDDLALILDSLRDVVAPRLDACGPGEMQGMLDALSGRFV
PAGPSGAPSRGRLDVLPTGRNFFTVDVRNLPTTTAWRIGFQSANLLLERHLQDHGDHLRQ
LGLSVWGTATMRTGGDDIAQAMALMGVRPVWATGSQRVDDFEILPISLLDRPRVDVTLRV
SGFFRDAFANLIKLFDAAVQAVAALDEPDDLNPLAARVREERQGFLAEGLDEDEAARQAG
WRIFGAKPGAYGAGVQGAIDGRLWQSRDDLAEVYLNWGGYAYGAADEGTPARQRFAQRLS
QVQAVLQNQDNREHDLLDSNDYYQFQGGMLAASESLSGQKTASYHGDHSQPDLPKIRTLK
EELNRVIRSRAANPKWIEGAKRHGYKGAFEMAATVDFLFAFDATTELIDDHQYALLADAY
LLDPATRDFIAEHNPDALRDMTERMLEAQQRGLWQEPGEYQQALEDLLLDIEEN