Protein Info for Psyr_2978 in Pseudomonas syringae pv. syringae B728a

Annotation: PAS

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 424 TIGR00229: PAS domain S-box protein" amino acids 20 to 145 (126 residues), 50 bits, see alignment E=1.6e-17 PF08448: PAS_4" amino acids 31 to 139 (109 residues), 43.1 bits, see alignment E=1.3e-14 PF13426: PAS_9" amino acids 42 to 137 (96 residues), 26.5 bits, see alignment E=1.9e-09 PF08447: PAS_3" amino acids 49 to 132 (84 residues), 55.6 bits, see alignment E=1.6e-18 PF00512: HisKA" amino acids 194 to 259 (66 residues), 34.2 bits, see alignment E=6.2e-12 PF02518: HATPase_c" amino acids 302 to 418 (117 residues), 81.1 bits, see alignment E=2.5e-26

Best Hits

KEGG orthology group: None (inferred from 100% identity to psb:Psyr_2978)

Predicted SEED Role

"Signal transduction histidine kinase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q4ZS60 at UniProt or InterPro

Protein Sequence (424 amino acids)

>Psyr_2978 PAS (Pseudomonas syringae pv. syringae B728a)
MPLHSAEQDREVAQYIDALRESERQFRTLADNMSQLAWTASPRGQVHWYNERWYAYTGAS
LEAMTALGWRSVLHPEHRERVMARLQYCFSTGSIWEDTFPIRGKDGAFNWFLSRALPLRD
ARGHITHWLGTHTDITAQVNAEEALRELNESLELRVAERTRELETANKLLQAEIAERAMA
EEALRHAQKMDAIGQLTGGIAHDFNNVLSGVIGALDMIRLRVAAGRIGEVARYLDAAASS
ANRAAALTRRLLTFARRQSLNVTVVDVNCMVRSMEELLRGTVGAHAHLEIELEEGLSAVR
TDEHQLENALLNLVINARDAVPVGGRLCVRSRSLTLAAQKEGLLPGDYIQLSVEDNGCGI
AQDVIDQVFDPFFTTKPVGQGTGLGLSMVYGFTRQSGGHVHIESTEGQGTRVHLQLPCGK
AAVA