Protein Info for Psyr_2969 in Pseudomonas syringae pv. syringae B728a

Annotation: RND efflux system, outer membrane lipoprotein, NodT

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 465 signal peptide" amino acids 1 to 27 (27 residues), see Phobius details TIGR01845: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family" amino acids 12 to 460 (449 residues), 342.9 bits, see alignment E=1.5e-106 PF02321: OEP" amino acids 61 to 249 (189 residues), 55.5 bits, see alignment E=3.4e-19 amino acids 277 to 458 (182 residues), 85.3 bits, see alignment E=2.5e-28

Best Hits

KEGG orthology group: None (inferred from 100% identity to psb:Psyr_2969)

Predicted SEED Role

"Outer membrane protein OprN"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q4ZS69 at UniProt or InterPro

Protein Sequence (465 amino acids)

>Psyr_2969 RND efflux system, outer membrane lipoprotein, NodT (Pseudomonas syringae pv. syringae B728a)
MSAYKVFIPSLLVMALAACAVGPDYQAPVTAPAKLASAAQGNYDRSKVDRVWWQQFEDPT
LNKLVARSLDGNRDLRVAFARLKSARAIRDDVANDVMPVVTSRASSDIGKGQQPGITERR
VNSERYDLGLDMAWEVDLFGRIQRQLEASDADQDAAEANLYQLQVTLIAEVVDAYGQLRG
AQLREAIARDNLKNQQSSQDVTTQLRDAGVGNELDVVRAEARLAAVEASVPQLQAEQARQ
RNRIATLLGERPENLSVDLSPSKLPAIAKALPIGDPTQVLRNRPDIRAAERQLAASTARI
GVATADLFPRVSLSGFLGFTAGRGSQIGSSAARAWSLGPSITWAAFDLGSVRAQIRSADA
DAEGALANYEQQVLLALEESENAFSDYDKRQQRLVSLMRQSDASRSAARLASVQYREGTA
DFLVLLDAERERLAAEDAQAQAEIELYRGIVAIYKALGGGWQPQA