Protein Info for Psyr_2940 in Pseudomonas syringae pv. syringae B728a

Annotation: PAS

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1353 signal peptide" amino acids 1 to 25 (25 residues), see Phobius details transmembrane" amino acids 313 to 333 (21 residues), see Phobius details PF03924: CHASE" amino acids 79 to 261 (183 residues), 161.8 bits, see alignment E=8.6e-51 TIGR00229: PAS domain S-box protein" amino acids 345 to 466 (122 residues), 90.1 bits, see alignment E=6.2e-30 amino acids 500 to 625 (126 residues), 46 bits, see alignment E=2.7e-16 PF13188: PAS_8" amino acids 346 to 400 (55 residues), 36.8 bits, see alignment (E = 1.3e-12) PF00989: PAS" amino acids 347 to 458 (112 residues), 59.7 bits, see alignment E=1.4e-19 amino acids 500 to 618 (119 residues), 31.5 bits, see alignment E=7.9e-11 PF08448: PAS_4" amino acids 353 to 463 (111 residues), 50.9 bits, see alignment E=8.7e-17 amino acids 503 to 621 (119 residues), 23.9 bits, see alignment E=2.1e-08 PF13426: PAS_9" amino acids 357 to 460 (104 residues), 52.6 bits, see alignment 2.4e-17 amino acids 504 to 620 (117 residues), 45.3 bits, see alignment E=4.7e-15 PF08447: PAS_3" amino acids 368 to 448 (81 residues), 32.8 bits, see alignment 3.4e-11 PF00512: HisKA" amino acids 641 to 706 (66 residues), 65.7 bits, see alignment 1.5e-21 PF02518: HATPase_c" amino acids 753 to 868 (116 residues), 100 bits, see alignment E=5.4e-32 PF00072: Response_reg" amino acids 1026 to 1139 (114 residues), 82.8 bits, see alignment E=1e-26

Best Hits

KEGG orthology group: None (inferred from 100% identity to psb:Psyr_2940)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q4ZS98 at UniProt or InterPro

Protein Sequence (1353 amino acids)

>Psyr_2940 PAS (Pseudomonas syringae pv. syringae B728a)
MKKSSLTWLVGWMAVVLLAGLSVSFIASHEQRRSIDARIGQALKEAGEGIGDNLQARLRV
YEYRLRGLRGAVHMLDLQHINSSQMGRYSKGRNIEKEYPGARGFGFIRRVAASDEAEFVR
RVREDGRPDFSLSRLSGPGTRQGDRFIIQFIDPLDRNVQALGLDITSEEHRRDAALQAMR
SGAATLSAPITLLQDNDDHMRAFLFLLPVYSTPEIPTDIAQRETSLIGWTYAPLAMREVM
SNLDPLNHRLHLKLYDVNEGRQLIYQTPENDHDQEVLQTYAFEREIYGRVWRMEVGAHPA
FIAALDPVPAGRVFIIGTLVSLMLTVLVGTLLLSRQRKQQVVAGQARLATIVENSSDAII
GEALDGRIITWNRAAEQMFGYDEHEVLGRPLAPLLVPPELVHEDEQLLERVARGERGPTL
ETRRLHKNGQLIDVTITCSFIRETDGTLLGAAKMMHDITDRKRVERYLMEFNAQLEQQVS
ERTAELSRVAGLLQGVLDASSEVSIIATDTQGQIFVFNRGAELLLGYSNSEMLSGNGPGV
FHLPEEVAARSAELSREYGTLIEGIDVFCYKASREGSETRQWTYVRKDGTTVPVLMIITP
IRTADGELIGHLGIAQDITERLHHSAELHAAKSSAEAANAAKSLFLANMSHEIRTPMNAV
IGISHLLHNTALNDQQRQLLTKLQIAGRTLLGIINDILDIAKIEAGEMRLEHNPFSPRQL
LDELGELFTPQAQEKGLRFSVNVVASLPGQLIGDALRVNQILMNLVGNALKFTSVGGVDV
TVSREDDHADTCCLRFSVQDTGCGIPGDVLGQLFSPFTQADASTTRRFGGTGLGLSVVRG
LAEQMGGRIGVESELGTGSEFWVELPFQISQSDLEPSGPGSSLEVMLLSDDAQSSMALQR
LCRGLGWRVASLTGEHDLRTALQERNHVNAALPDVLLVDWQQPQVEEVQQLIEATPLPVI
LVTSSEIRAELHPLVDKVLLKPLDSSALFNAVNACIARYQGSTERVIQATRMDTSMTLWL
SGLHLLLVDDSEINLEVASLLLQQQGAVVQTCSNGLLALERLRQTPDFFDAVLMDVQMPE
MDGYEATRRLRSELGLTRLPVLALTAGALAEERRQAELAGMDDFLTKPLDPAALIRAVRR
AVERVRGAPLAVGTLLQEASTGSAWPVIEGIDTQEVAARLGNDVPLFLSSLRRFFSEFAA
FGESESVLARARQNPDQTMADLHKLRGSALLLGATQVGLHAGQAETLLRNAADPEQAVRA
LSAAFRSLQERTPVLEERPLAPRIDADPDVSRQALSTLRELLENHDIAALDQFPLAAVAL
QELAGQALVEQLWQTIEGLEFEQALHLLERAEL