Protein Info for Psyr_2780 in Pseudomonas syringae pv. syringae B728a

Annotation: Phage tail tape measure protein lambda

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1161 transmembrane" amino acids 339 to 365 (27 residues), see Phobius details PF06791: TMP_2" amino acids 207 to 335 (129 residues), 78.8 bits, see alignment E=5.1e-26 amino acids 332 to 482 (151 residues), 120.9 bits, see alignment E=6.3e-39 TIGR01541: phage tail tape measure protein, lambda family" amino acids 760 to 1114 (355 residues), 144.3 bits, see alignment E=2.5e-46 PF09718: Tape_meas_lam_C" amino acids 902 to 976 (75 residues), 96.3 bits, see alignment 8.9e-32

Best Hits

KEGG orthology group: None (inferred from 100% identity to psb:Psyr_2780)

Predicted SEED Role

"Phage tail length tape-measure protein 1"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q4ZSQ3 at UniProt or InterPro

Protein Sequence (1161 amino acids)

>Psyr_2780 Phage tail tape measure protein lambda (Pseudomonas syringae pv. syringae B728a)
MTTIAELGIKVDSGDAAQAATDLDKLAAAGGRAEKAADGVSSGFDKASTAASSLSSAEGK
LNETTDQAIARLTAMAKASLDSSEYYQRLTTSVTGNTAAVDASSSSASSLAALRRRLQAD
SDALVGSTDQLAESTKKAAAATGVEAEGLQALLGKINPTLTALGKLDEQQAQLQKYKNAG
LIDADTFKEYSTRIDASRQKLGEFGESVKSAGVSAAQTQAALRQLPSQFSDIFTSLIGGQ
NPLQVFLQQGMQIKDSFGGIGPTIDVLGGKIKSILGIGGGIGSIGDALQAVGSGGKAAAE
GAEAAGDGIGSLAEGANTAADAGKNAKEAADALRAAGGGLSVGIGAVLVGAAAAAAALVA
LGVAYKQGSSEATAYTTALIMTGNTAGTTAGQLSDMARAVSSANGTVNEASQTLTLLSGS
TRISASYFQMIATAAANMEDATGKSTAETVKNFEKLAKEPLKASLEFTEQLNYLTAATYS
QIAALERQGQTQAAAEVAFKSYADATNTRTEQITANLGILEAGWKKVGDNAKLAWDAMRD
VGRDQSLDEQITNTKKILEDRKTGWLSGLFEGSESTRVLQDRLKLLEKARDVQAGEAKKT
GEQQSAQRAAVLAATKVDELEKSSRTNAEKRSEALKAYERNLEAIRKVNPTDDRLKPENV
SKIKSNIADQFKDPAKPTSALDMTAFNTAQNQLKSINGYYDGIQKELEASQKAGLISAES
YASQRAAIIDQQKGDITSAYQVEIDALETLRGKASTSAEQRIQLDQKIADARTSMLEAQK
KAETEQEVLATSEKGRLEKQRLAVAAYTAALEQQVKTLREQGQRSASSLGMGDRQRGLTD
QQNSVDDRINQQKVELANQYGDGSRGMSLDEYNLKLAALNKNQQDLRDAVQASYDYMTVA
QGSWSAGASSAFQNYLESARDVAGQTKSLFTSAFSSMEDSVANFAITGKGSFSDFTKSIL
ADMARIATRQASSALLSSLVGAATSYFTGGTGNGLASGSAGAISSNAGASAAGYSNSALS
GWSGVAQAKGGAWSNGVQMFANGGAFTNSIVSKPTAFGISGGGVGVMGEAGDEAIMPLTR
TPSGQLGVRALSGGGSSESNTYNFPVSVSVQTSGDSGSSSTQEASTQLGKGIQQAAKTEA
ETAIARALQPGGSIWRLTNGR