Protein Info for Psyr_2715 in Pseudomonas syringae pv. syringae B728a

Annotation: Major facilitator superfamily

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 464 transmembrane" amino acids 30 to 49 (20 residues), see Phobius details amino acids 61 to 80 (20 residues), see Phobius details amino acids 95 to 114 (20 residues), see Phobius details amino acids 121 to 142 (22 residues), see Phobius details amino acids 154 to 177 (24 residues), see Phobius details amino acids 189 to 209 (21 residues), see Phobius details amino acids 257 to 278 (22 residues), see Phobius details amino acids 298 to 316 (19 residues), see Phobius details amino acids 323 to 340 (18 residues), see Phobius details amino acids 346 to 366 (21 residues), see Phobius details amino acids 377 to 400 (24 residues), see Phobius details amino acids 412 to 431 (20 residues), see Phobius details PF07690: MFS_1" amino acids 36 to 397 (362 residues), 157.3 bits, see alignment E=2.7e-50

Best Hits

KEGG orthology group: None (inferred from 100% identity to psb:Psyr_2715)

Predicted SEED Role

"D-galactarate permease" in subsystem D-galactarate, D-glucarate and D-glycerate catabolism

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q4ZSW8 at UniProt or InterPro

Protein Sequence (464 amino acids)

>Psyr_2715 Major facilitator superfamily (Pseudomonas syringae pv. syringae B728a)
MNGSRLLNTVPGTTDVTVLARAAAKVKRHVLPLFVVMFIVNYIDRVNIGFVRSHLETDLG
IGAAAYGLGAGLFFVGYALFEVPSNMLLQRYGARAWLTRIMFTWGAAAMAMAFVQGETSF
YVLRFILGAAEAGFFPGIIYYFTQWLPSSDRGKAMALFLSGSAIASVISGPVSGALLGLE
GMNLHGWQWMFLIEGFASIVLCGFVWFWLQSHPHEARWLSDEEKTALSTAIAEEQRLREA
SQTVRPSVFRLLADRQILLFCFIYFSVALTIYGATFWLPSMIRKMGSFSDFEVGLFNSIP
WIISIVAMYGFAALAARFKHQQAWVAVTLVIAAAGMFMSTVGGPVFAFVAICFAAIGFKA
ASALFWPIPQGYLDARIAAAVIALINSIGNLGGFVAPTTFGFLEQTTGSIQGGLYGLAAT
SLLAAVVIFFARTTPRGDRGRPSRAERPAALSPAVNGTPSSLKP