Protein Info for Psyr_2631 in Pseudomonas syringae pv. syringae B728a

Annotation: HopL1 protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 899 PF10139: Virul_Fac" amino acids 25 to 893 (869 residues), 1169 bits, see alignment E=0

Best Hits

KEGG orthology group: None (inferred from 100% identity to psb:Psyr_2631)

Predicted SEED Role

"Putative virulence factor"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q4ZT52 at UniProt or InterPro

Protein Sequence (899 amino acids)

>Psyr_2631 HopL1 protein (Pseudomonas syringae pv. syringae B728a)
MTTLTTRQIQLAHAWTSVHTGAGLALDWVADVAEKVEEVAIKADALSRDLHRARNLSRSL
GRVSTTPMGIGFFGLSQAGKSYLISALAADEKGQLLTRLGTRQLDFIKHVNPVGGGKEAT
GLVTRFTRTAAPSLDPQFPVELRLFREVEIAIILANAWFEDFDHQRLNSQVTDAQIDALL
QRFDGQSAAAPTPGVSSDDVVLLWDYLEHHYANAMRPLNARYWPCVIKLAPRLSVRERAQ
LFEPLWGGIGKMTETYEQLASALHRLGLAETVFAPISALVTERDGQLVQSNSIINVDILS
RLGGSADSPIEVRPAHEGTLRSAVSVNRAELAALTNELIFRLDNEPANAIVNSVDLLDFP
GYRSRQKLMSINEASEVDSNGTANNPVARLLLRGKVAYLFERYTNEQEMNALVMCTSTFK
QSEVVSVGPVLKSWIDKTQGTSPQQRDGRASGLIWALTMCDGFIGGALNGETVQFPEGCD
NMLKLTMIERFGNEDWMKQWGSTPFKNTYLVRKPRFKTSFIELAADGEERAYSDSSHTAL
QALQQAFSNSELVKRHVAEPQEAWQAMLTLNDGGMTRFSSAFSPIANIDFKLQRIAEQLD
ELMVQLLPRLEEYYEAGGEDERAKKKVIANMIARPFATTPHGKHVLGELLGYMALPEQQL
RDLYLNGDFGSPASEATAAVQAVGKPEVEYDIFGEAIAATATVETPAAAAVAPQYQSHEH
RFARAAFDLWATHLRNLSRRQHLLDLLELPAEAIALLVKELVVCAERLDLPLQLSNALLK
RAQSGVRRENLVQRQVLTAQLLLNDFAAWFGHTAQPAGQRPTGLLGAKQPLFAFYQKEMP
GRFPHLAAQADDQSVIFADDWISGIAIHTQKNVGHRKGKEITPEQNEAMGRVIQAFKAR