Protein Info for Psyr_2623 in Pseudomonas syringae pv. syringae B728a

Annotation: conserved hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 419 transmembrane" amino acids 154 to 178 (25 residues), see Phobius details

Best Hits

KEGG orthology group: None (inferred from 100% identity to psb:Psyr_2623)

Predicted SEED Role

"Uncharacterized protein containing a von Willebrand factor type A (vWA) domain"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q4ZT60 at UniProt or InterPro

Protein Sequence (419 amino acids)

>Psyr_2623 conserved hypothetical protein (Pseudomonas syringae pv. syringae B728a)
MQRITIDATSHPAELLNTLESKVALLRRHFPPSVSRLFAIPRAGTDGTLQWWSELGGQHL
PYHSLDAGAQQALLARYLQRQQAIVQLADELQARDRADEANSLRTLVGAPALNNLYSLND
EPVVIRWGMAQPVAPAIPSTLPVSSLASPASRRWWLRIPVLLLLLPLLLILLWLLWAWRG
SVWNVFNTAPMGNYSCTQGVPAPDFAVVLDTSGSMNLNIDTSSEDEAWMYQVGGALPADN
PRKARVLAEPTRLTVAKQAFGAMLGQLHPDIDTRLITFQGCEGTVDQGVFQRDARQQLLA
GVGKLSADGGTPLVASLIKSASLVDGRFKDALVVMFVDGEDGCGQNACEVSARIARQQPR
LRINVVNISDSKLSNCIAENTGGRVYAAREAGEVQRMLREAMEEVAAAPACTEKKIPGE