Protein Info for Psyr_2622 in Pseudomonas syringae pv. syringae B728a

Annotation: Acriflavin resistance protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1014 transmembrane" amino acids 12 to 29 (18 residues), see Phobius details amino acids 333 to 351 (19 residues), see Phobius details amino acids 358 to 379 (22 residues), see Phobius details amino acids 385 to 408 (24 residues), see Phobius details amino acids 429 to 451 (23 residues), see Phobius details amino acids 461 to 485 (25 residues), see Phobius details amino acids 519 to 540 (22 residues), see Phobius details amino acids 836 to 858 (23 residues), see Phobius details amino acids 865 to 887 (23 residues), see Phobius details amino acids 894 to 917 (24 residues), see Phobius details amino acids 940 to 959 (20 residues), see Phobius details amino acids 971 to 995 (25 residues), see Phobius details PF00873: ACR_tran" amino acids 3 to 995 (993 residues), 741.8 bits, see alignment E=2.4e-226 PF02460: Patched" amino acids 322 to 473 (152 residues), 23.1 bits, see alignment E=4.3e-09 PF02355: SecD_SecF" amino acids 331 to 461 (131 residues), 22.4 bits, see alignment E=1.4e-08 PF03176: MMPL" amino acids 341 to 487 (147 residues), 26 bits, see alignment E=9.1e-10

Best Hits

KEGG orthology group: None (inferred from 100% identity to psb:Psyr_2622)

Predicted SEED Role

"Cobalt-zinc-cadmium resistance protein CzcA; Cation efflux system protein CusA"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q4ZT61 at UniProt or InterPro

Protein Sequence (1014 amino acids)

>Psyr_2622 Acriflavin resistance protein (Pseudomonas syringae pv. syringae B728a)
MNISALSIRYPVPAVMLFLLLTLFGFLGFERLGIQDFPDTDLPAVVISASLEGAAPEQLE
TEVARKLEDKLTSLRLLKHVTTQITEGSVLINVIFDIDKDGNEALNEVRNAVDSAAAELP
ANLDTPSVTRLTTNTTALLTYVVDAPRMDEEALSWFVDNELSKQLLTVRGVAKISRVGGV
DREVQVDLDPALMAGLGLSVTDIADRLRAMQKDNSGGQGDLGSGQQALRVLGGIDDPAAL
GAIRIPVSDGRMLAVQQLATVRDTHAERNTLAYRDGKPVIGFQVIRSLGFSDVGVTRDLR
QAVNEFAIQHPDVRIEEASNAVEPVMENYRGSMALLYEGMLLAVLVVWWFLRDWRATIIV
ATALPLSIIPTFGVMYFAGFSLNTVSLLALALVIGILVDDAIVEVENIARHLRMGKTPRQ
AAIEASDEIGLAVLATTVTLVAVFLPTAFMGGISGKLFRQFGVTASAALMFSLLVARLLT
PMMAAYLLKPRPHGEHDSGLMRRYLGWIHTSLSRRKTTMAIVGALFIGSLALIPLLPTSF
LPAQDIASSTVSLELPPGSSLAQTGEVALQAEKRLRAIPEVAHVFIAAGSGETGGAGDRD
AKLTVDLLPRDQRALKQSQVEASMRESLRSLPGVRVTVGGDASGERLDIVLASDDGDLLE
RTAAALEPQLRQIKGIGNVTSSAAVQRPEIQMRPDVVRAAEQGISSQDIADTLRMATYGE
YSSSLGKINLSQRQVNVRVRMQPQVRTDLQSLGQLRVTGRDGQIALASLGELSMGSGPAQ
IDRIDRLRNITLSIELNGSNLGEVMEQARQLPVMQNLPAQVKLVEQGELQLMSELFGNFS
LAMAVGVFCIYAVLVLLFHDFMQPLTILSALPLSLGGALLALLIGGMSFSMASVIGLLML
MGIVTKNSILLVEYAIMARRAPTVSRYDALIDACHKRARPILMTTIAMGAGMLPTALGWG
GESGFRQPMAVVVIGGLLASTVLSLLVVPVIFTYVDDGHEAFKRWFSRPRQTQD