Protein Info for Psyr_2621 in Pseudomonas syringae pv. syringae B728a

Annotation: Secretion protein HlyD

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 367 signal peptide" amino acids 1 to 34 (34 residues), see Phobius details TIGR01730: efflux transporter, RND family, MFP subunit" amino acids 42 to 359 (318 residues), 195.4 bits, see alignment E=6.2e-62 PF16576: HlyD_D23" amino acids 78 to 267 (190 residues), 46.5 bits, see alignment E=2.8e-16 PF13437: HlyD_3" amino acids 179 to 270 (92 residues), 47.3 bits, see alignment E=2.9e-16

Best Hits

KEGG orthology group: None (inferred from 100% identity to psb:Psyr_2621)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q4ZT62 at UniProt or InterPro

Protein Sequence (367 amino acids)

>Psyr_2621 Secretion protein HlyD (Pseudomonas syringae pv. syringae B728a)
MRKIHVYGLLTLAVLGVSGWLLSGRAEPPPAAAAPPATSLTVEAVQPRREDWPQERVASG
ALAPWQEAVISAETGSLRIASLKADIGDQVKKGQVLATLADDSVLAEENKQKSAAAQATA
QLQEARSNARRAASVGQSGALSEQKLEEYRVKVQTAEADLASANADLRSIRIKLAQTRIV
AVDDGIISGRKALLGDVVSAGSEMFRMIRDGRIEWQAELDAQQLPGVKAGQLARVTLPGG
IAVQGRVRLVSPMLDSKTSRALVYVSLPVGSVARAGMYASGRIELPSSPALTVPDTSVIL
RDGRSYVFVLGKDMRVSQQVVEVGRRRGSALEILGGLPEQAQIVRSGGAFLNDGASVTLV
NAEARVQ