Protein Info for Psyr_2614 in Pseudomonas syringae pv. syringae B728a

Annotation: Amino acid adenylation

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 500 1000 1500 2000 2500 3000 3500 4000 4500 5000 5372 transmembrane" amino acids 269 to 289 (21 residues), see Phobius details amino acids 3509 to 3526 (18 residues), see Phobius details amino acids 4174 to 4196 (23 residues), see Phobius details amino acids 4578 to 4593 (16 residues), see Phobius details PF00668: Condensation" amino acids 30 to 466 (437 residues), 245.7 bits, see alignment E=1.7e-76 amino acids 1120 to 1563 (444 residues), 160.6 bits, see alignment E=1.1e-50 amino acids 2222 to 2660 (439 residues), 169.6 bits, see alignment E=2.1e-53 amino acids 3269 to 3708 (440 residues), 374.5 bits, see alignment E=1.4e-115 amino acids 4341 to 4781 (441 residues), 159.1 bits, see alignment E=3.2e-50 PF00501: AMP-binding" amino acids 494 to 846 (353 residues), 322.3 bits, see alignment 7.6e-100 amino acids 1583 to 1943 (361 residues), 278.8 bits, see alignment 1.3e-86 amino acids 2680 to 3022 (343 residues), 265.8 bits, see alignment 1.2e-82 amino acids 3730 to 4066 (337 residues), 238.3 bits, see alignment 2.5e-74 amino acids 4801 to 5139 (339 residues), 288.6 bits, see alignment 1.4e-89 TIGR01733: amino acid adenylation domain" amino acids 515 to 921 (407 residues), 465.5 bits, see alignment 4.3e-143 amino acids 1604 to 2022 (419 residues), 432.7 bits, see alignment E=3.8e-133 amino acids 2701 to 3097 (397 residues), 431.4 bits, see alignment 9.7e-133 amino acids 3751 to 4141 (391 residues), 428.4 bits, see alignment 8e-132 amino acids 4822 to 5214 (393 residues), 446.9 bits, see alignment 1.9e-137 PF13193: AMP-binding_C" amino acids 905 to 980 (76 residues), 37.5 bits, see alignment (E = 7.2e-13) amino acids 2006 to 2082 (77 residues), 25.2 bits, see alignment (E = 5.3e-09) amino acids 3081 to 3157 (77 residues), 43.6 bits, see alignment (E = 9.2e-15) amino acids 4125 to 4201 (77 residues), 26.6 bits, see alignment (E = 1.8e-09) amino acids 5198 to 5274 (77 residues), 38.7 bits, see alignment (E = 3.2e-13) PF00550: PP-binding" amino acids 1009 to 1070 (62 residues), 42 bits, see alignment (E = 1.8e-14) amino acids 2112 to 2173 (62 residues), 46.1 bits, see alignment (E = 9.8e-16) amino acids 3186 to 3249 (64 residues), 53.6 bits, see alignment (E = 4.3e-18) amino acids 4230 to 4292 (63 residues), 45.3 bits, see alignment (E = 1.7e-15) amino acids 5304 to 5363 (60 residues), 40.4 bits, see alignment (E = 5.9e-14)

Best Hits

Predicted SEED Role

"Non-ribosomal peptide synthetase modules, pyoverdine??" in subsystem Siderophore Pyoverdine

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q4ZT69 at UniProt or InterPro

Protein Sequence (5372 amino acids)

>Psyr_2614 Amino acid adenylation (Pseudomonas syringae pv. syringae B728a)
MLPGHDLTTGCRRLLRAARPPLCEKKCMALALTAAQRNIWLDQMTQGDSPLYNIGGHLEI
DGALDYELFQRAVDLLIAKHDALRMVLLDQRDEEGVPLQTFATSMPMPVTPIDLQRQDDP
FQAAEHWMQRQLERAFRLDGEPLFRIHLLKLEAQRFYCMIYAHHIALDGWGIDGLCASLS
ELYNALHDQHTPDLTAPSYVDFIKDDSQYRGSRRFALDQTYWLDKYRDIPEPLLVPRPRP
AQIQNEAPSRSGHLSYGLARDLEQQIDDLALSLNASSFHVLLAVLYVYFTRAYQRDELVI
GLPILNRPNASYKKTLGLFTQLSSVRLKFSVDLSFAELVQGICRAVKQDYRSQRFPVSDL
NRLLELRRAERTQLFDLTFSYERNNHLLRFGQATAHAVKSSNNHEQTPLAIHLRTNAYEA
ESRLHYIYNEAYFQHDEIAPLAERLRHVLEQGLANPHLPVHGFSLTGMTDTFKMQTWNAG
QPHFANDLTIHQQFEARAAERPDAAALVFEEQTLSYGELNARANQVAHRLLALGVRPDDR
VAICVERGPAMIIGLLGILKSGAGYVPLDPAYPLERLAYTLGDSAPVALLSQQSVQPALP
VSDVPLIYLDDVDLQDERACNPQVSVRPSDLAYVIYTSGSTGLPKGVMVEHRNVARLFSA
TQDWFGFNEQDVWALFHSFAFDFSVWEIWGALLHGGRLLIVPQLVSRSPEDFYNLLCSAG
VTVLNQTPSAFRQLIAAQDDKEQVHSLRQVIFGGEALETAMLKPWYARKVNASTQLVNMY
GITETTVHVTYYPLQPEDARRVGASPIGKRIPDLQLYLLDAYGHPLPPGAVGELYVGGAG
VARGYLNRDELNTTRFLDDPFASAPGARMYRSGDLGRWLPDGSLEYLGRNDEQVKIRGFR
IELGEIEARLSACEGVRDAVVVVREDEPGDQRLVAYVIGTAGQEPDATWLREQLRLSLAE
HMLPSAFVSLEAFPLTANGKLDRKALPVPTADAFARSQYEAPEGLVETRLATLWVELLGV
EQVGRHDQFFELGGHSMLAVKLIERMRDIGLNADVRVLFGQPTLASLAAASGKTTDVQVP
ASRIPADCQRITPNMLPLARLSQAQIDRVVAAVPGGVSNVQDIYGLVPLQEGILYHHLSS
GEGDPYLLQALLRFNSFEQLLDFTEALQQVIDRHDILRTAVAWEELDEPVQVVWRQARLR
VEAFLPHPDQGDVAAQLQAQFDPRRIRMDLHQAPMMRLHYAEDPADHSWVAVLLFHHLID
DATSLALLGAEIEAFRQGRGEGLPASVPYRNHVAQARLSVSREDHEAFFREMLADVDEPT
LPFGLQDVQGDGSGVDEALLPVALELAQRLRAHARRLGVSNASLHHLAWAQVVGRLSGRQ
DVVFGTVLMGRLLSGQGAERALGMFINTLPLRVAAGEQGIQAAVRTTHARLAALVSHEHA
PLSLAQGCSGVAAPTPLFSALMNYRHVAVGAQAPQDAGQTRTWAGVEVLGGEERTNYPLS
LSVDDLGDSFGLTVQAVTGIGARRICGYMHTVLEQLADALDSQPDAPLHSLDWLPAHERR
QLLEDFNALDGAYPKDLLLHQLFEAQAAAQPDSMAVTYEGQHLSYAELNQWANQIAHRLI
AEGIGADDRVAICVERGLEMIAGLVGILKAGAGYVPLDPSYPEERLAYMLEDSAPKMLLT
QRDLRERFAQAAMPVLLLEADARAENAIDSAPTTNPQLAGLNAQHLAYLIYTSGSTGQPK
GVAMPHAPLVNLMHWQIAQTVEHRRPRQRTLQFAALGFDVAFQEIFSTLCAGGELSLIHS
DMRLDFRRLFQHICEQRIERLYMPCIALQALAEAVVAEPEQPECLLQDVITAGEQLRITE
PMRHFFARLNDARLHNHYGPTESHVVTAMTLEGNPQAWPTLPSIGQPVANTRIYLLDEHM
RPVPVGVAGELYIGGVCVARGYLNRDDLTADRFIADPFATREDGNPCARLYKTGDLGCWQ
DDGNIIYMGRNDDQIKIRGFRIELGEIEARLGQYPGLRDAAVLAREDVPGEKRLVAYFSV
QAGQALPEADHMRLHLQAVLPDYMIPAAYVHLEKLPVSPNGKLDRRALPQPSAEAFVSRD
YQAPFGDTETMLAALWCEVLSVERVGRQDHFFELGGHSLLAVKLIERMRQVGLSADVRVL
FGQPTLAALAAAVGGGIEIDVPANGIPDGCTHIIPDMLTLTTLDPASIERIVAGVSGGAA
NVQDIYPLAPLQEGILYHHIAAEQGDPYLLQATFALHDPTHVRRFAEGLQAMIDRHDILR
TALVWEGLEQPLQVALRRVELSMEQITLAQDGGDIVAQLQRRFDPREYRLDLNQAPLIHL
AFAEDSENQRWVAILLFHHIALDHTALDVMSVEMLAHLQGTAAQLPAAMPYRNYVGQARL
GVSRKQHEAFFREMLGDVDEPTLPFGLLEVQGDGQGIKEVRHALPANLCQRLRTQARQLG
VSAASLHHLAWARVLGSASGREDVVFGTVLLGRMQSGLGADRALGMFINTLPLRVDVGNC
AVRQAVRQTHARLTALLGHEHAPLVLAQRCSAVAAASPLFSALLNYRHSPAREASGGERW
ADTQVLGVRERTNYPLTLSVDDQGEGFLLSVQVAAGFDGQRICGYMQTALSHLVEALESA
PDSAVRDLSVVPETERRQLLVAFNDTARDYPQQQTVHGLFEAQVRAHPEACAAIHDGVAV
SYAELNNRANRLARHLLGLGVQPGDSVAILLERSHDLLASQLAVLKCAAVYVPLDVNAPV
ERQSFMIEDSRARVLLTHSQVSLTTGAQRVDLDGLTLERLKGTDLALPPQSSESVAYIMY
TSGSTGTPKGVLVPHRAISRLAINNGYADFNAQDRVAFASNPAFDASTLDVWAPLLNGGC
VVVIGQHDLLSPLNFQRLLLEQSVSVLWMTAGLFHQYASGLGEAFSRLRYLIVGGDVLDP
AVIGRVLANNPPQHLLNGYGPTEATTFSATYEIVSVGNGSIPIGKPVGNSRLYVLDNQGQ
PAPLGVGGELYIGGQGVARGYLHRDELTLEKFVADPFDSDPQARLYRTGDLVRWRADGNL
EYLGRNDEQVKIRGFRVELGEIEARLAEHAEVREAVVLCRQDAPGDKRLVAYVTAQQPET
ALDIEHLRSHLQGLLPDYMVPAAYVQLDSLPLTANGKLDRKALPVPDAQSLVSRGYEEPL
GEVEVALAEIWAEVLQVERVGRNDHFFDLGGHSLLAMRMVSQVRQQLGVELPLGELFALG
ELAAVAAALSSVARSELTAILPVKRDQPMPLSFAQQRLWFLAQMDGGNEAYNIPMALSLE
GMLDVTALTRALARIVERHETLRSRFVSREGSAQVLFAPTCADARLSVEDIRHAPHRLEG
CIRVEAVAPFDLALGPLIRAHLLRVTDERHVLLLTVHHIVADGWSMGVLSQELLALYPAF
CQGQPDPLPPLAIQYTDYAVWQRRWLSGERLQHQAAYWRQALEGAPTLLTLPTDRPRPAQ
QDFAGASLAVQLNASLTADLRKLAQRQGVTLYMALMAAWATTLARLSGQADVVIGSPVAG
RGRTELEDLVGLFVNTLAVRIDTSGSPSGEALLTQVKARVLEAQEHQDLPFEQVVEVVRP
TRSLAHPPLFQNTLNWMPGKHAAASLGDLRVELVGQISQVSKFDLSLNLSEHGETLVGTL
DYATALFDEVTVQRYLGYFVQVLETLAADEQAHLDRITLVGEEERRYLLETLNTAALQVH
DEQTVHAMIEARAASAPEGVAAQVGEHCLHYGEMNHRANALAHHLISLGVGVDDRVAVMA
RRGLDTLVAMLAVLKAGAGYVPVDPSHPDERIAYLLADSAPKVVLTQQALTSRVPETAAP
VIAFDRPEWPQRLENPQVAGLNAAHLAYVIYTSGSTGQPKGVMVEHRTVGNLIDWHCQAF
GLQAGSHTASVAGFGFDAMAWEVWPALCAGATLHLPPADVGNEQIDALLDWWIAQPLQVA
FLPTPVAEYAFSRNLSHPTLRTLLIGGDRLRQFQRDPGFTVINNYGPTEATVVATSGRLL
PDGSLDIGKPITNTRVYLLDEHQQLVPLGVAGELYVAGEGVARGYLNRPEMTAERFLRDP
FHCDADARMYRTGDLARWNADGTLDYLGRNDDQVKIRGLRVELGEIEAQLSQLPGIEEAL
VLAREDEPGQPRLAAYFIERDGSLSMPVSELRAALLAVLPGYMVPSAFVRLAAWPLTANG
KVDRRALPLPDREALPGRDYEAPQGPVETAVAEIWSSLLQVERVGRHDHFFELGGHSLLA
VNLIAQMRHQGLNADIRTLFTQPTLAALAAAVGGASEITVPENAIPDDCTRITPEMLPLA
DLDQAAIDLIVASVPGGVANVQDIYSLAPLQEGILYHHLAAEAGDPYVLQSVFEIADRAR
LNAFVGALQSVIDRHDILRTAVQWQGLETPVQVVCRQAQLPMEQVELDPLEGPIMEQLQQ
RFDPRHSRLDMSQAPLLRLVFAEDQPNQRWAAILLFHHMVLDHTALEVVLHDMQAHLLGQ
AGQLDVAIPYRNYVAQARLGVSREDHEAFFRELLGDIDEPTLPFGLLDVQGDGRDMGESS
LTLDRQLNLRLRAQARKLGVSAASLFHLAWAQVLSKVSSKRTVVFGTVLIGRMQSGEGAD
RALGMFINTLPLRVDLAGQDARGGVRATHARLTALLGHEHAPLVLAQRCSGVAAPLPLFS
SLLNYRHSGVAEPSVESIEAWRGIEVLSGEERTNYPLTLNVDDLGDAFRLSVLVTGKVGG
ERVCGYMQTALGSLVDALEQSPDTALDSLPILPAAEREQLLVQFNDTALEYPHEQTIHGM
FEAQAERTPEALAVVHGEQRLSYRQLNERANRLAHALRKQGVQPDSRVGICVERGPEMVV
GLLAILKAGGGYVPLDPAYPVDRIAYMLQDSAPAAVLAQTATQSLLADVSVPVINLDQDS
WQDESVQNPEVPGLTSVHLAYLIYTSGSTGLPKGVMIEHRNTVNFLTWAHSAFAGSALEK
TLFSTSLNFDLAVYECFGPLTSGGSIKVVQNVLELQHGDHDIGLINTVPSALKALLEINS
LPKSVHTVNVAGEALKRSLVENLFEKTGVQRLCNLYGPSETTTYSSWVAMDREQGFAPHI
GKPVGNTQFYLLDEQQQLVPLGVAGEIYIGGAGVARGYLNRDDLTAERFLADTFSRHPQA
RMYRTGDLGRYLPDGNIEYLGRNDDQVKIRGFRIELGEIDARLAKHPAVHEAVVTAREDV
PGDKRLVAYYTVLSAQTEPAIDSLRGWLLGQLPAYMVPVAYVRLDAMPLTPNGKLDRKAL
PAPGEGALISRGYEAPQGEREILIAAIWQDLLGVTQVGRHDHFFEMGGHSLLAVSLMERM
RQEGLEAEVKSLFKHPTLMEYAATTERMEIVL