Protein Info for Psyr_2604 in Pseudomonas syringae pv. syringae B728a

Annotation: conserved hypothetical protein; putative membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 201 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details transmembrane" amino acids 66 to 88 (23 residues), see Phobius details amino acids 106 to 126 (21 residues), see Phobius details amino acids 138 to 163 (26 residues), see Phobius details amino acids 175 to 198 (24 residues), see Phobius details PF01810: LysE" amino acids 12 to 189 (178 residues), 25.9 bits, see alignment E=3.1e-10

Best Hits

KEGG orthology group: None (inferred from 100% identity to psb:Psyr_2604)

Predicted SEED Role

"FIG00957335: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q4ZT79 at UniProt or InterPro

Protein Sequence (201 amino acids)

>Psyr_2604 conserved hypothetical protein; putative membrane protein (Pseudomonas syringae pv. syringae B728a)
MTMYYVAIAMLTVLLVPGPTNSLLLQSGISRGLSTYSLKLVAAEWAAYVIQISAWGLSID
ALIEHYGWVVVTTKVLAVMFLFYISLKLWFSIHQGPDGKPSPISVSALFLATLNNPKGLF
FATLIAPAGTFLHVESYLSFMTVFSLVVLPVGMTWVALGAIFGRKLPSIIAGNRVNRLVS
LIIGLFAIIALYNVAATTIFT