Protein Info for Psyr_2576 in Pseudomonas syringae pv. syringae B728a

Annotation: Amino acid adenylation

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 500 1000 1500 2000 2500 3165 transmembrane" amino acids 529 to 542 (14 residues), see Phobius details amino acids 1314 to 1332 (19 residues), see Phobius details amino acids 2643 to 2662 (20 residues), see Phobius details PF00668: Condensation" amino acids 7 to 451 (445 residues), 232.4 bits, see alignment E=1.8e-72 amino acids 1076 to 1514 (439 residues), 152.3 bits, see alignment E=3.6e-48 amino acids 2138 to 2565 (428 residues), 147 bits, see alignment E=1.5e-46 PF00501: AMP-binding" amino acids 472 to 809 (338 residues), 254.5 bits, see alignment E=3e-79 amino acids 1536 to 1871 (336 residues), 255.2 bits, see alignment E=1.9e-79 amino acids 2588 to 2938 (351 residues), 312.5 bits, see alignment E=7.7e-97 TIGR01733: amino acid adenylation domain" amino acids 492 to 884 (393 residues), 424 bits, see alignment E=1.2e-130 amino acids 1556 to 1946 (391 residues), 428 bits, see alignment E=6.7e-132 amino acids 2609 to 3011 (403 residues), 455.2 bits, see alignment E=3.9e-140 PF00550: PP-binding" amino acids 967 to 1026 (60 residues), 47.9 bits, see alignment (E = 2.7e-16) amino acids 2029 to 2087 (59 residues), 47.2 bits, see alignment (E = 4.2e-16) amino acids 3097 to 3155 (59 residues), 49 bits, see alignment (E = 1.2e-16) PF13193: AMP-binding_C" amino acids 1930 to 1998 (69 residues), 29.3 bits, see alignment (E = 2.7e-10) amino acids 2996 to 3067 (72 residues), 33.4 bits, see alignment (E = 1.5e-11)

Best Hits

Predicted SEED Role

"Non-ribosomal peptide synthetase modules, pyoverdine??" in subsystem Siderophore Pyoverdine

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q4ZTA7 at UniProt or InterPro

Protein Sequence (3165 amino acids)

>Psyr_2576 Amino acid adenylation (Pseudomonas syringae pv. syringae B728a)
MLATSAATYPLTAAQRDVWLDQISRGDSPLYNIGGYLQLSGAVDPVTLHKALEQLVCAHE
VLRTVLMPGAGADGMPLQSYAACLPVSLPLHDVSGYPEPEQAARALINDNMRRPYVLDGS
PLLDFCLIRLADDRHWLAGQAHHLILDGWGFGQLFKSLGELYSALMAGKDLELVAPGYSA
FIADDARYQASQRYSLDRAYWLEKYRDLPEPLLVSRYHNRRATDPAPSHAWVQPLPGTLH
ARMKQFAERHHASAFHVLLAVLHVYFTRTAQRDEWIVGLPLLNRSGARFKATLGHFAQVS
AVRMAFDDGLDFAALVVEVRDALKRDFRHQRFPLSELNRSLELSREGRAQLFEVSVSYEL
EDHGYCYTDAQAQTVKVSNGYEATPLAVHLRSNSCNDEASLHLVHHRAWIEDDEAQAIAG
RLLHILEQGLENPALKIQDFHLSVPAEQLQLTAWNQTERVTDDEQLIHRRIEQQARTRPY
AVAAIFQGQHLTYAQLNRQANALAQRLIYQGVRPDDRVAIVSRRGLETLVGLLAILKAGA
AYVPIDPSHPRERLHYLLSDSAPVVVLTLSSLIKRLPPLAVPLIELDHCIDGQGAENNPQ
VAGLSSDNLVYVIYTSGSTGQPKGVMVEHRTLANLVDWHCQAFDVKASSHTSCLAGFGFD
AMAWEVWPTLCAGATLHVAPVQDGGEDIEAMLDWWRAQPLDVSFLPTPVAEYAFSQSQDH
PTLRTLLIGGDRLRQFTHNRRYTVVNNYGPTETTVVATSGQVLANGSLHIGGPIANTRVY
VLDEHLQAMPVGVPGELYIGGEGVARGYLNQPQLTDERFVVDPFSDMPQARMYRSGDLVR
WNRDGSLDYLGRNDDQVKIRGMRIELGEIEAVLAGLDGVKDAVVLVRELHLLAWFTETST
VDIDTLAPAMRARLPGYMVPRAFTRLASLPLTANGKLDRRALPDPDPAYLLGNAYEAPQG
EVEIAMAAIWAQVLGIQRVGRHDNFFELGGHSLLAVSLVEQLRKAGLKADVHVLLSQPTL
AALAACQADVSTFKVPTNLIPAGCKQITPGMLSLVSLEQSAIDRIVASVPGGAANVQEIY
PLAPLQEGILYHHLTAEQGDPYLLQWRLAFDTPERLYSWAAALQEVIDRHDILRTSVVWQ
GLESPQQVVWRNAELTVQAIEFEAEDPESTVIDRLQRQFDARHHRLDLTQAPLMRLVHAQ
QSSSGETVAILLFHHLVLDNTAMEIVSREMQALLFGHRYDLKTPVPYRNYVAQVRLANDE
ASHTAFFTEMLGDVDEPTLPFGIQDVHAGGSDIEEERRALDPELALRLREQARLLGVSAA
SLMHVVWARVLGVLANRRDVVFGTVLLGRMGGEGADRALGVFINTLPLRVDTALDTRSAV
KAVHARLSALIAHEQASLVLAQGCSAVASGSPLFSALLNYRHSAEVKPQDGEGLWQGVRV
LGGDVRSNYPLTLCVDDLGEGFDLHMLAQQGMGAERITGWVLNTLEHLLDTLEQALPLRL
ENVAILDAAERNHLLLDFNGSEQPFPQGCTVNALIEAQAASQPHSPAVIQGGHVLTYAQL
NERANRLAHHLIGLGVKTDERIALCLHRGPARLVAMLAVLKAGAAYVPVDPVYPAERIAY
LLQDSTPRVVLTENSTHDLAGDTERVNIEQAEWLGSSGNNPSVADLDAQKLAYVIYTSGS
TGQPKGVMVEHCTLVNLVHWHCQAFALQAGSHTASVAGFGFDAMAWEVWPALCAGAVLHL
PPAEVGNEHVDELLDWWLEQPLQVGFLPTPVAEQAFRRPRQHPTLRTLLIGGDRLRQFDS
DPGFAVINNYGPTETTVVATSGAVQPGGPLHIGGPIANTRVYVLDEQLQPVPVGVVGELY
IGGAGVARGYLNRPQMTEERFIADPFSAATQARLYRSGDLVRWNADGSLDYLGRNDDQVK
IRGMRIELGEIETALASQAEVQDAVVLVRGERLLAWFTESAPVEPEALREALRARLPAHM
VPLAFTRLDALPLTSHGKLDRRALPDPELEALTSQAYAAPVGETEILMADLWAHVLGLEK
VGRHDNFFELGGHSLLAVSLVERLRNAGLSVDVRVLLGQPTVAALAASVGKGREIPTPLN
RVPAGCTYITPDLLSLSQLDQTTIERIVATVPGGAANVQEIYPLAPLQEGILYHHLTAEQ
GDPYLLQLRMNVDSQERLEAVAAALREVIARHDSLRTAIVWDGLETPQQVVWRQADLLVE
RVPMAQIDTPAGSARMDLSCAPLIRLAYCPDATGPGLSATLLFHHIVVDATALEVMREEM
LAHLRGEPGPTQPAVPYRNYVAQARLGVSEAEHEAYFREQLGDIDEPTLPFDLRDVQGDG
HCIEEAPQMLPDALLQRLRTQARQLGVSVASLLHLAWARVLGAATGNDRVVFGTVLLGRL
QGGAGADRGMGMFINTLPLRVDLGNISVRDGARDTHARLAALLGHEHASLAQAQRWSGVA
APLPLFSAILNYRHAAGQARQDAQLDAWQGLEILTSEKHTNYPLSLNVDDLGDSLRLSVT
VPPRVGAQRICAYVQQTLTAMLDALEGQPDLPVQHLSVIGAEERQRSLVDFNATAIHHDL
QQTLHGLFEAQAVRTPQAIALRAGRAQLSYRQLNEQANCLAHHLIDLGVRPDQRVAICVE
RGLSMVIGLLAILKAGGAYVPLDPGYPRERLQYMVKDSTPVALLVQGSTRDLLDDEHALR
IDLDSVTWDAQRDQNPRVPGLTAEHLAYVIYTSGSTGTPKGVMVEHRNVSNLVQWSSVLC
PPASGTVLLQKTPISFDASVWEIFWPLSSGIPLVLARPDGQRDPAYLAQVIQERQVSVVQ
FVPALLQQFLDLPQSSACSSLTDVVCGGGELTVEMAAQLRKRLPEVRLHNVYGPTETTVD
CSVWTLQPDQAVPDTALPIGRPISNTRLYVLDAYDQPVPQGVIGQLHIGGAGVTRGYLNL
PKTDAERFIDSPFVAGDRLYRSGDLVRQRADGNLKFLGRNDDQVKIHGLRIEPGDIQACL
ISHPGIEQAIVLVRDEQPGGQRLVAYYTGTQLPVETLREVLRAQLPDYMVPALFVHLDAM
PLSPNGKLDRKALPAPGQDALLTRPYEAPQGETEVLLARLWSELLGVGQVGRHDNFFELG
GHSLLAVSLTARLRQEGIEADVRALFEQPTLAGYAAITENMEITL