Protein Info for Psyr_2511 in Pseudomonas syringae pv. syringae B728a

Annotation: UvrD/REP helicase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 797 PF00580: UvrD-helicase" amino acids 103 to 197 (95 residues), 31.9 bits, see alignment E=1.7e-11 amino acids 496 to 576 (81 residues), 43.5 bits, see alignment E=5e-15 PF13361: UvrD_C" amino acids 673 to 754 (82 residues), 26.2 bits, see alignment E=8.3e-10

Best Hits

KEGG orthology group: None (inferred from 100% identity to psb:Psyr_2511)

Predicted SEED Role

"UvrD/REP helicase family protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q4ZTH2 at UniProt or InterPro

Protein Sequence (797 amino acids)

>Psyr_2511 UvrD/REP helicase (Pseudomonas syringae pv. syringae B728a)
MGRGLTGLRSQHAPSWSQGHADGYLNGHIEGVREGYEEGYLDGQESGRQVLVISDTRPAR
HRGPKVDDHLFDDWRLALTPELKKRIKADVAEKLPAHAQPSAAQWKMIFSDTPSTYVIAG
AGAGKSTSLVLRILLLHHYLGFELNAMTVVTFTRESRKDFISKLIDVMALWGHALEQKQA
REVVRTFHSRILPLVRSLPGFEQLRAFENLSSQSSGLEEADSNPFDLRINDAQRQQLNLC
YRDLYAGNERFREVMAPLYRHALQLKELDRDHPDVQKRVAVTELSSKRDEEWCDTVEDLW
IRAGAWPIKGIEPMRQAVEINGFPFSFHGYIAELDAWVVLGLDASEDQQLKRPGAKLPVW
AEGVIKRTLFQAFCSKPLIWLDNYQSANEVLQSLAGEAAAGPGFDYRVKGELGAAPLLDC
FVTAASFIENLGLDVPSAVSEMSFASDDPDRFFFEALSLFWKAFETHLLAQSPPIMTYNR
MFALFGETSPENLKHVSDPMLRPLAHLMIDEFQDVSPQIVSWLRASLREIRRRGPALHTG
RIAQHSSLLCVGDDWQSIYGWRGSSPKYFMEFAKEFSSPATTRVMLSDNFRSHQHIIDAA
EHIVRAAPAIPGKKARASGLLQELLPVKVLDRDEDELAERVAEHYHDGDSILLLYRKGSE
KARFSARLQALIDADSANGAQNRRIRTLTYHSSKGLQADAVFLLGDCQHLTVSPYKNQVY
RLAGLGDTNDLQPFDTAQKDEVLRLAYVAITRSARHCYWYIDESATSGDAVQMPKASDRI
ARDKPFFEDLRNRVRAG