Protein Info for Psyr_2484 in Pseudomonas syringae pv. syringae B728a

Annotation: Acriflavin resistance protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1035 signal peptide" amino acids 1 to 30 (30 residues), see Phobius details transmembrane" amino acids 336 to 354 (19 residues), see Phobius details amino acids 361 to 382 (22 residues), see Phobius details amino acids 388 to 410 (23 residues), see Phobius details amino acids 431 to 453 (23 residues), see Phobius details amino acids 464 to 486 (23 residues), see Phobius details amino acids 529 to 548 (20 residues), see Phobius details amino acids 857 to 875 (19 residues), see Phobius details amino acids 882 to 902 (21 residues), see Phobius details amino acids 908 to 933 (26 residues), see Phobius details amino acids 955 to 974 (20 residues), see Phobius details amino acids 986 to 1012 (27 residues), see Phobius details PF00873: ACR_tran" amino acids 6 to 1012 (1007 residues), 1063.9 bits, see alignment E=0 PF03176: MMPL" amino acids 245 to 508 (264 residues), 41.3 bits, see alignment E=1.5e-14

Best Hits

KEGG orthology group: K07789, RND superfamily, multidrug transport protein MdtC (inferred from 69% identity to avn:Avin_28790)

Predicted SEED Role

"Acriflavin resistance plasma membrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q4ZTJ9 at UniProt or InterPro

Protein Sequence (1035 amino acids)

>Psyr_2484 Acriflavin resistance protein (Pseudomonas syringae pv. syringae B728a)
MNLSAPFIRRPVATVLLSLAIMLLGAVSFRLLPVAPLPNMDFPVIVVSASLAGASPEVMA
STVATPLERSLGSIAGVNTMTSNSSQGTTRIILQFDLDRDINGAAREVQAAINASRNLLP
SGMRSMPTYKKVNPSQAPIMVLSMTSTVLEKGQLYDLASTILSQSLSQVSGVGEVQIGGS
SLPAVRIELEPQMLSQYGVSLDDVRTAITGANVRRPKGFVEDDQHNWQVQANDQLETAKD
YSPLIIRYKDGATLRLKDVAKVSDAVEDRYNSGFYNNDRAVLLVVNRQAGANIIETVAQI
KAQLPALRAVLPASVSLNIAMDRSPVIKATLHEAEMTLLIAVVLVVMVVFLFLGSFRASL
IPTLAVPVSLVGTFAIMHLFGFSLNNLSLMALILATGLVVDDAIVVLENISRHIHNGLDP
MKAAFLGAKEVGFTLLSMNVSLVAVFISILFMGGLVESLFREFSITLSVSIIVSLIVSLT
LTPMLCARWLKPREAHGENAFQRWSERVNDRMVAGYDRSLGWVMRHRRLTLLSLLITVVV
NIALYVVVPKTFLPQQDTGQLMGFVRGDDGLSFSVMQPKMETFRLSILADPAVESVAGFI
GGSGGTNNAFMIVRLKPIAERKLSAEKVVERLRKNMPHVPGGRLFLAPDQDLQLGGGREQ
TSSQYQYIVQSADLGSLRLWYPKIVAALKSIPELTAIDAREGRGAQQVTLVVNRDTAKRL
GIDMNMVTAVLNNAYSQRQVSTIYDSLNQYKVVMEVNPKYAQDPVTLEQVQVITADGQRV
PLSSIAHYERSLANDRVSHDGQFAAENISFDLAEGASLDKATVAIERAIAAIGLPSDIIS
KMAGTANAFASTQKSQPWMILGALLAVYLVLGILYESYIHPLTILSTLPSAGVGALLTIY
VLGSEFSLISLLGLFLLIGVVKKNAIMMIDLALHLEREQGMTPQESIRSACLQRLRPILM
TTMAAILGALPLLLSTAEGAEMRKPLGLTIIGGLIFSQVLTLYTTPVVYLYLDRLRHRYN
KWRGVRTDAALETPL