Protein Info for Psyr_2443 in Pseudomonas syringae pv. syringae B728a

Annotation: conserved domain protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 407 PF13692: Glyco_trans_1_4" amino acids 191 to 328 (138 residues), 72.7 bits, see alignment E=2e-24

Best Hits

KEGG orthology group: None (inferred from 100% identity to psb:Psyr_2443)

Predicted SEED Role

"Glycosyltransferase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q4ZTP0 at UniProt or InterPro

Protein Sequence (407 amino acids)

>Psyr_2443 conserved domain protein (Pseudomonas syringae pv. syringae B728a)
MMQLIRCFLEQGWQITFASPATEGEHRADLLSLGINEVHITLNDSSFDVFVSQLQPDVVL
FDQFMIEEQFGWRVEQQCPDALRMLETSDFQSLRHARHQLLKDSLNSDCAEAGPGSADVS
APQLFRQIASSDLAQREIASLYRCDLNLMTSDVEIALLSGPFGLPAALLHWCPLMIDGIP
DSFRPFAQRAHFLSIGNFRHAPNWDAVLWMKTVIWPLIRQQLPEAQLHIYGAYTPPKASA
LHNAAQGFHVKHWAEDALEVMSNARVCLAPLRFGAGIKGKLMDAMLCGTPSVTTPVGAEA
MSGGLPWPGIIADNPAEIAGAAVRLYQDQNLWLEAQQAGQALLQARFQHRQHCASLIERI
ETLRNGLTEHRLANFTGAMLRHHHHKSTKYMAQWIEAKNRNKDEKPA