Protein Info for Psyr_2412 in Pseudomonas syringae pv. syringae B728a

Annotation: YD repeat protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 923 TIGR03696: RHS repeat-associated core domain" amino acids 574 to 653 (80 residues), 83.4 bits, see alignment E=1.3e-27

Best Hits

KEGG orthology group: K11021, insecticidal toxin complex protein TccC (inferred from 100% identity to psb:Psyr_2412)

Predicted SEED Role

"Rhs family protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q4ZTS1 at UniProt or InterPro

Protein Sequence (923 amino acids)

>Psyr_2412 YD repeat protein (Pseudomonas syringae pv. syringae B728a)
MNAQSAALHHHTPRLTVIDPRGLEIRAIDFWRNPLIDTPERLVNRAAHDAAGHPVSCWDA
RLWESQAAVNIATVFSLSGQALFSDSVDAGWRLMLAGESGEVVVSRDGRGTERSVQYDAQ
LRPVAIIENGRCVERRQYGGADTQGHNQCNQCIRHDDPAGSRMDAEFALTGGVLEQTRHF
LFNPENVDWPEPLTERDALLESGPGATTRWARSPPGDVISQTDAQRNVQTFAHSAAGHIE
AISLSLPGQTERILIHRIDYDAQGHVTSETAGNGVMTKALHDAANGRLIELKGTRADGQL
LQHLLYDYDPVGNVLRIEDRAQPTRYYRNQRLEPVSTYQYDTLYQLIQATGTESAKRNKG
PVFPSFQVPPDPTQLANYRQTYRYDASGNLLQLTHTGTQSHSRTLVTSQTSNRSLPVIND
QPPDEAAIAAAFDANGNLSELQAGQAMSWDWRNQLQQVRPVVREAGDDDKERYVYDASGQ
RLRKIHTTKAKAVVHNAEVRYLPGLEVHSNSATAETLHVIVTQAGRNEVLVLHWQAGQPE
GLENDQVRYSFADHLGSGTLELDKNAHIISQESYYPFGGTSWWAGRSTIEASYKTIRYSG
KERDATGLYYYGLRYYAPWLQRWINTDPAGTVDGMNLYRFVGNSPLRFADQQGAAPYDVP
ITVVVAKDLSEFSPEQLSKMYDAKDAAVSLLGFTRSELLKASPRRDVNKAFDATFGALAP
SARAATSIDVEDSLRQMHELIEGIGSPESDLTLFLFDGPEHILASTHFQGEFDESVERIG
VSASLLANYDVLEVARSLIHEASHVRLNTMDAFYYLTDPDKLLVDGADTAQVKAWSGELR
KSLRKISKHGPNEKRFDPANYIVAMQALTENAHTPAQRKQEFLSTTTTRTSLLLMNADTL
SSLVMATGQSARYAQTRINQSGH