Protein Info for Psyr_2401 in Pseudomonas syringae pv. syringae B728a

Annotation: extracellular solute-binding protein, family 1

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 341 signal peptide" amino acids 1 to 26 (26 residues), see Phobius details PF01547: SBP_bac_1" amino acids 37 to 281 (245 residues), 68.9 bits, see alignment E=1.2e-22 PF13416: SBP_bac_8" amino acids 45 to 299 (255 residues), 152.5 bits, see alignment E=3.2e-48 PF13343: SBP_bac_6" amino acids 85 to 295 (211 residues), 34.2 bits, see alignment E=3e-12

Best Hits

KEGG orthology group: K02055, putative spermidine/putrescine transport system substrate-binding protein (inferred from 100% identity to psb:Psyr_2401)

Predicted SEED Role

"ABC transporter, periplasmic spermidine putrescine-binding protein potD"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q4ZTT2 at UniProt or InterPro

Protein Sequence (341 amino acids)

>Psyr_2401 extracellular solute-binding protein, family 1 (Pseudomonas syringae pv. syringae B728a)
MVLNKRATAVLAAGVLAFSSVAAIAAESVNFVSWGGSTQDFQKEAWAAPFSKASGITVVQ
DGPTDYGKLKAMVESGNVQWDVVDVEADFALRAASEGLLEPLDFSAIKRDEIDKRFVTDH
GAGSFFFSFVLGYNESKVGGKAPGDWAAMFDTKTYPGKRALYKWPSPGVLELALLADGVA
PDKLYPLDLDRAFKKLDTIKKDIVWWGGGAQSQQLLASGEVSMGQMWNGRVYALQQDGAP
VGVSWKQNLVMADFLVVPKGAKNKDAAMKFIANATSAKGQADFSNLSAYAPVNTQSVARL
DSTLAPNLPTAHVADQITLDFAYWAKNGADIATRWNEWLVK