Protein Info for Psyr_2338 in Pseudomonas syringae pv. syringae B728a

Annotation: Protein of unknown function DUF1275

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 234 transmembrane" amino acids 24 to 46 (23 residues), see Phobius details amino acids 74 to 94 (21 residues), see Phobius details amino acids 101 to 120 (20 residues), see Phobius details amino acids 126 to 154 (29 residues), see Phobius details amino acids 177 to 197 (21 residues), see Phobius details amino acids 203 to 223 (21 residues), see Phobius details PF06912: DUF1275" amino acids 29 to 217 (189 residues), 125 bits, see alignment E=1.7e-40

Best Hits

KEGG orthology group: None (inferred from 100% identity to psb:Psyr_2338)

Predicted SEED Role

"membrane protein, putative"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q4ZTZ4 at UniProt or InterPro

Protein Sequence (234 amino acids)

>Psyr_2338 Protein of unknown function DUF1275 (Pseudomonas syringae pv. syringae B728a)
MLPQPATSSVSPRHLSMQKWRGRVGMGLVASLSVLAGMTDAIGFMATGDFVSFMSGNTTR
LAVAISDGDLSVTVRLTLAILAFIAGNALGVVVARLGGRRALPLLLGIATLLCAAAAWPL
ESNMLALIWAILAMGMLNAAVEQVNGLPVGLTYVTGALSRFGRGLGRWMLGERRDGWRVQ
LVPWVGMFIGAVIGALLEHRLGLNALLISGSLSTLLGLVSLKIPHRWQRQYMPR